BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2416.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310119|ref|YP_003774211.1| hypothetical protein Hsero_0784...    97   5e-22

>gi|300310119|ref|YP_003774211.1| hypothetical protein Hsero_0784
           [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score = 97.1 bits (240), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 3/131 (2%)

Query: 19  DLGEIHSLPELPVIRKALPELLPGEQESSLPPLDMPVDPGMVVLNRLLGPECSSDSPAWS 78
           +L EIHS   L  ++K+ P L   E+ +SLP L++PVDP   VL  LLGP  +SD+P W 
Sbjct: 20  ELAEIHSTEALTGLQKSRPLLSNEEEAASLPALELPVDPLQRVLTELLGPALTSDNPVWR 79

Query: 79  ANPVPRMRELQKALIAHSLQLPE-ELRGPCLAAVRRVNDNIDWRLRLQQMRRSHAEGPSN 137
            +PVP +R LQ+ L+AHSL LPE   R P + A+R+V   +  RLR  QM+  HAE  + 
Sbjct: 80  GDPVPSLRGLQRLLVAHSLTLPEGAARAPLMDALRQVELAVRMRLRWLQMK--HAEALTG 137

Query: 138 QQDQEDDEKKE 148
             D E    +E
Sbjct: 138 VADTEAAHAQE 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 508,433
Number of extensions: 21294
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)