BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2412.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310123|ref|YP_003774215.1| hypothetical protein Hsero_0788...   143   5e-36

>gi|300310123|ref|YP_003774215.1| hypothetical protein Hsero_0788
           [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score =  143 bits (361), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/146 (50%), Positives = 108/146 (73%), Gaps = 8/146 (5%)

Query: 1   MSLSAKEVPAQQHASP----MTREQAQHIIERASKDSFLAPEIEQLREKCCLFIGEVMQE 56
           MSLSAK++ +   A+P    MT +QA  IIERASKD +LA +++ +R+KC  F+ ++M E
Sbjct: 24  MSLSAKQLRSPDAAAPSTQPMTHDQAMEIIERASKDKYLARDLDLMRDKCYAFVSDMMDE 83

Query: 57  INQALAEKEKRIPALLRSKSD---STISLQAASREREKLIKQRRELAEAMVIGALLNSDN 113
           + +ALAEKEK  PALL+S+ +   + ISL+A +++RE+  ++RRELAEAMV+GALLN DN
Sbjct: 84  VTKALAEKEKHTPALLKSRPEQAVTAISLRATAQKREETARKRRELAEAMVLGALLNMDN 143

Query: 114 PGWNPLDPSTGKSSGGSLLLALLKTA 139
           P W+P +P+T +SS     +ALLK+A
Sbjct: 144 PDWDPRNPATHRSSDN-FFIALLKSA 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 319,055
Number of extensions: 10015
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)