BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2409.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310126|ref|YP_003774218.1| hypothetical protein Hsero_0791...   147   4e-37

>gi|300310126|ref|YP_003774218.1| hypothetical protein Hsero_0791
           [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score =  147 bits (372), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 97/145 (66%)

Query: 16  RREVIDVPERKREDRRLDQLLHVRKQRLGRLERERNEARQAWRASRNQLQQARQLWRDML 75
           +REV+DV E KR DRRLDQLL+VRKQRLGRLERERNEAR +WR  R  L      WR   
Sbjct: 17  KREVVDVAEPKRPDRRLDQLLNVRKQRLGRLERERNEARSSWRTLRTDLGAKTDQWRQAR 76

Query: 76  ARTQEQWQQSRREFMQMTLTTGQFNRAKALYKRMQAESAQQYLRCQEWVERCRQARAVFF 135
            R Q +W  +R  F  MT+T   F RAK  Y+RM+ E+ Q  L C      CR+A   +F
Sbjct: 77  ERAQSEWMAARAAFFGMTITNADFKRAKTAYERMKMEAGQMRLACVSLARACRRAGDDYF 136

Query: 136 EARRKVLEANRQQEKLSVLRDQMRA 160
            AR++V +AN+QQEKL+VLRD+M+A
Sbjct: 137 IARQRVKDANKQQEKLTVLRDEMKA 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 450,586
Number of extensions: 15185
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)