BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2404.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310131|ref|YP_003774223.1| Type III secretion HprX protein...   422   e-119

>gi|300310131|ref|YP_003774223.1| Type III secretion HprX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  422 bits (1084), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/258 (78%), Positives = 236/258 (91%)

Query: 1   MQSSTLIDLHSLMVTIAIVTPRVLVCLVILPGFGLNVLTGMVKNATAMAIALPAAVPTFL 60
           M +S L+DL +++VT+A+VTPRVLVCLVILPGFGLNVLTG+ KN  AMAI+LPAA+PTFL
Sbjct: 1   MPASLLLDLQAVLVTMALVTPRVLVCLVILPGFGLNVLTGLAKNTAAMAISLPAALPTFL 60

Query: 61  FVQDRVPDFLLSAMLAFKEAMIGLLFGVLMALPLWVTQSIGSIFDMQRSPIQIQANNASV 120
           FVQ   PD L + ++ FKEAMIGL+FGVLMA+PLWV QSIGSIFD QRSPIQIQANNA+V
Sbjct: 61  FVQRTAPDMLTTGVMVFKEAMIGLMFGVLMAIPLWVVQSIGSIFDSQRSPIQIQANNATV 120

Query: 121 DRDASAIGAMLLQAVVLVMVQAGLFSALARILLESYALWPAYTLLPPFEPGHFEVLVKRF 180
           DRDASA+GA+LLQAVVLVMVQAG+F+ +ARIL+ESYA+WPA+TL PPFEPGHF+VLVKRF
Sbjct: 121 DRDASAVGALLLQAVVLVMVQAGMFAGMARILIESYAVWPAFTLAPPFEPGHFDVLVKRF 180

Query: 181 GEFLWYVVVYGAPVIIPLMLIEFAFAIIGVFASNLQVSFASAPIKSLVGLLILLMYWATF 240
           GE LWY+VVYGAPV+IPL+LIEF FAI+GVFASNLQVSFASAP+KSLVGLLI+L+YW+TF
Sbjct: 181 GELLWYIVVYGAPVLIPLVLIEFGFAIVGVFASNLQVSFASAPVKSLVGLLIMLLYWSTF 240

Query: 241 SHHVTGDFAHLLDLLASL 258
           SH+V GDFAHLLDLL  L
Sbjct: 241 SHYVAGDFAHLLDLLTVL 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.141    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 741,923
Number of extensions: 28138
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)