BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2401.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipopro...   369   e-103

>gi|300310135|ref|YP_003774227.1| type III secretion HrcJ
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  369 bits (946), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/288 (66%), Positives = 226/288 (78%)

Query: 22  LLAHLSRVGAILVLLLLLSACSRSVNLQAGLSDGDANEIVLVLNRKGISVEKQKNKEGVT 81
             A + R+G +L+LL  L+ACSR V LQA L+D DANEI+LVLNRKGI V+KQK K+GVT
Sbjct: 3   FTARMLRMGCLLLLLATLAACSRMVVLQAALNDADANEIILVLNRKGIEVDKQKGKDGVT 62

Query: 82  LIVKEDDLSRATETMNEAGLPRRSLSNLGEVFKKQGMISTPMEERIRYIHGLSEELESTL 141
           L+VK+ +LSRATETMN AGLPRRSLSNLGEVFKKQGMIS+PMEERIRYIHGLSEELEST+
Sbjct: 63  LLVKDVELSRATETMNAAGLPRRSLSNLGEVFKKQGMISSPMEERIRYIHGLSEELESTM 122

Query: 142 QQFDHVISARVHVVLPERIAPGEPIQPSSAAVFVKYRPPMDEDMVMPRIRKLVASSIPGL 201
            QFDHV+SARVHVVLPERIAPGEPIQPSSAAVFVKYRPP+DED VMPRIR+LVASSIPGL
Sbjct: 123 LQFDHVVSARVHVVLPERIAPGEPIQPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGL 182

Query: 202 SGEEGRAKVTVVMMPGEVPTAGIEWTTLGPFVVAVSSVRALGFTLLGLGLLILLAGGWLL 261
           + E+GR+KV+VVMMPGE PT GIEWT LGPF VAVSS   L  T+  L L  L + G++ 
Sbjct: 183 ASEDGRSKVSVVMMPGEPPTPGIEWTMLGPFTVAVSSAGGLALTMSALLLTTLSSLGYIG 242

Query: 262 VLNVQRNPKLMLMIARLSMRKAKAGDPSESAPAAATAAPAANKPAQAK 309
           +    R+P++  M+A  + R+ K       A A   A P A +P   +
Sbjct: 243 LQRALRHPRVARMVAEFAARRIKKAQDKAQAKAQGQAKPQAPEPTAGR 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,485
Number of extensions: 26026
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)