BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2400.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310136|ref|YP_003774228.1| HrpD-like protein [Herbaspirill...   117   5e-28

>gi|300310136|ref|YP_003774228.1| HrpD-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score =  117 bits (294), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 106/202 (52%), Gaps = 18/202 (8%)

Query: 14  SQAFLDWWFAPWQYIETPALPGMSDTLVARRDSYRAWCEQAALAPDLPRLFDPGWQSAAS 73
           S +FLDWWFAPW Y   P  P +   ++A+RD+YR WC    +A DLP   D  WQ    
Sbjct: 15  SASFLDWWFAPWSYAHRP-WPSLCQGMLAQRDAYRDWCRVVGVAADLPDSGDLRWQMTI- 72

Query: 74  QQGQELRRRAGLFGGLFAARDRQQSVLGTLARDQQSWCQRVSLAQPLTRCVPDIGSTDSA 133
           +  +E    A L+GGLFAAR   Q+ L  L   ++ WC  V+L QPL    P  GS    
Sbjct: 73  RDSEEFHHAATLYGGLFAARRHDQAELAWLTPAERRWCLSVALTQPLQ---PWSGSLPE- 128

Query: 134 QADAVVV---GLAELAWRLEQDFPGMWARLRGLLDMSERTRIDDALPAARRRPVSESSAA 190
           +  A+ V   G+AELA RLE+ FPG+W+RLR LL   E  ++   L      P   +SA 
Sbjct: 129 ELRAIGVRARGMAELALRLERAFPGLWSRLRLLLPEQEAHQLAQVL-----TPTLSASAP 183

Query: 191 A----RRALRCWQFCCTRAQQG 208
                 R   CWQ C  +A+ G
Sbjct: 184 PPLPRERERNCWQLCLAQARAG 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,487
Number of extensions: 25756
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)