BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2397.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310139|ref|YP_003774231.1| hypothetical protein Hsero_0804...   108   1e-25

>gi|300310139|ref|YP_003774231.1| hypothetical protein Hsero_0804
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  108 bits (271), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%), Gaps = 1/127 (0%)

Query: 7   DHWLQTLPLDEPVVIDGETVFLRVKPEGAELGVYLAGQPTDSALADAMRVSFQSAREFEA 66
           + WLQ LPL EP+ I GE++ L V  +GAEL + L  +P+ + +A+AMR  FQ A +FEA
Sbjct: 7   EQWLQALPLGEPIDIGGESLCLLVDDDGAELVLVLLREPSQAQIAEAMRSGFQCALDFEA 66

Query: 67  GLGWEQDAG-LVLSRWIAGASGWHDLAEPLEQILNQLALWRAAMSRTHSSQDKHAKRDEE 125
           GL   +D+G LVL+RW+A A  W D+AE LE ILNQ AL R AM  + +     A R E 
Sbjct: 67  GLAIAEDSGALVLNRWLAQAETWVDVAEALEDILNQAALCRVAMKPSTARPAPEANRAEL 126

Query: 126 RFYKLLS 132
           R    L+
Sbjct: 127 RMRAALN 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 479,262
Number of extensions: 19780
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)