BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2390.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310146|ref|YP_003774238.1| general protein secretion prote...   562   e-161

>gi|300310146|ref|YP_003774238.1| general protein secretion protein
           BfpE [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  562 bits (1448), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/356 (76%), Positives = 318/356 (89%)

Query: 2   VLRDLNRWWARTQFTATVRLSLYRKIAKMLSHGLPLLKILEELRDRASEHGKKPYEPLAI 61
           +L DLNRWWA+ QFT T RL LYRK++KMLS+GLPLLK+LEELRDR S +GKKP EPLAI
Sbjct: 1   MLPDLNRWWAKAQFTDTARLRLYRKMSKMLSNGLPLLKVLEELRDRESHYGKKPKEPLAI 60

Query: 62  VLDDCRRMVQNGRLLAEGLDWWVPRSEQMIIMAGEQSGKLEHTLMAVVGVVQAGKKLQGV 121
           +LDDCRR VQNGRLL+E L+ W PR+EQMI+MAGEQSGKLE TL+AVV VVQA KK+  V
Sbjct: 61  ILDDCRRSVQNGRLLSEALEGWAPRAEQMILMAGEQSGKLEGTLVAVVNVVQARKKIHSV 120

Query: 122 ILGGLAYPLSVLALVIVYIYLFGTRVIPEFTRMIDPSGWHGAARSLYLMSVWVQHWMVYA 181
           I+GG+AYPL++LALV+ Y+YLFG +VIP+FT M+DP+ WHGAARSLYLMS+WVQ WM Y 
Sbjct: 121 IVGGMAYPLAILALVLSYVYLFGVKVIPQFTLMMDPAKWHGAARSLYLMSLWVQQWMGYT 180

Query: 182 VLGLLVLLVVLVLSMSRWTGSLRIVVDRLPPYSIYRLMVGCGFLTAFSALQSAGVTVEKS 241
           ++ L +L+V+L++SM RW G+LRI VDR PPYSIYRLMVG GFL AFSALQSAGVTVEK+
Sbjct: 181 LVALALLIVLLIVSMPRWRGNLRIWVDRTPPYSIYRLMVGSGFLMAFSALQSAGVTVEKA 240

Query: 242 LLRLSAMAQPWLRERLDGALLGVRSGLNCGEALRNAGYQFPSKEVIDDLCVYAEYKGFAE 301
           L+RLS +AQPWLRERLDGALLGVRSGLNCGEALRN GY FPS+EVIDDLCVYAEYKGFAE
Sbjct: 241 LMRLSGVAQPWLRERLDGALLGVRSGLNCGEALRNTGYGFPSREVIDDLCVYAEYKGFAE 300

Query: 302 ALKLLADEWMEQGVEAISLRMKVLNGFSIITLALVIGWLVTGFFGIQQEIAALTRS 357
           ALKLLADEWMEQGVE ISLRMKV+NGF+++T+A+VIGWLV GFFGIQQEIAAL R+
Sbjct: 301 ALKLLADEWMEQGVEMISLRMKVVNGFAVVTMAMVIGWLVIGFFGIQQEIAALARA 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,972
Number of extensions: 42676
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)