BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2388.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310148|ref|YP_003774240.1| hypothetical protein Hsero_0813...   172   2e-44

>gi|300310148|ref|YP_003774240.1| hypothetical protein Hsero_0813
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  172 bits (435), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 113/165 (68%)

Query: 1   MWGLIVALVMIAAGEFYSSTSSQALAVVQSNSGREVAAEMALYRQAVIDYFSAHDLRGTS 60
           MW  +V  VMIAA   Y++ + QA+           AAE+ +YR AVIDYFS HD+  TS
Sbjct: 1   MWNAVVLAVMIAAAGVYTTRNLQAVDQAHQELASADAAEVGIYRNAVIDYFSDHDVVNTS 60

Query: 61  VSIEALKSAKALPSWSVLYQQSDRLLWDNYRDQDGIIYIYSTSLPSTNITADLNQISGNS 120
           VS  +LKS   LPSWS LYQQS  L W NYRD DG+IY+Y+TSLP  N+ A+L +++ NS
Sbjct: 61  VSTASLKSGAYLPSWSRLYQQSGALSWTNYRDADGVIYVYATSLPPRNLAAELARLARNS 120

Query: 121 LLVGVYRRGKSTLQSGLFGDTGIPVAALAGRGIADGAPLWIAMTQ 165
           +L+GVY    +TLQS ++G+T IPV AL+   I +GAP+W+AMT+
Sbjct: 121 VLLGVYDSAHATLQSPVYGETHIPVTALSSLSIPNGAPVWLAMTK 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 508,270
Number of extensions: 19423
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)