BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2386.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310150|ref|YP_003774242.1| soluble lytic murein transglyco...   216   6e-58

>gi|300310150|ref|YP_003774242.1| soluble lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  216 bits (551), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 130/164 (79%), Gaps = 4/164 (2%)

Query: 2   PMVLTHPDHSAAAGIPVIRRLGRDLLAGILLASSCG--LAHACWEQVANWYGVNVHLLYA 59
           P+   +P+H   A     +RL    +A +L A S    LA ACW + A+WYGVNVHLLYA
Sbjct: 3   PIHPEYPEHPERASWR--KRLLWQAVALMLAALSYAPTLALACWNETASWYGVNVHLLYA 60

Query: 60  IAKTESNLNPLARNQNKNGSYDIGLMQINSAWLPTLKKYGIDESRLRDPCVNLQVGAWIL 119
           IAKTESNLNP A N+NKNGSYDIG+MQINS+WLPTL+KYG+ E  LRDPCVNLQVGAWIL
Sbjct: 61  IAKTESNLNPKAMNKNKNGSYDIGMMQINSSWLPTLRKYGVTEENLRDPCVNLQVGAWIL 120

Query: 120 SQNMQKMGPTWEAVGAYNARNPKLRIEYARRVYRNIPTEALVQA 163
           +QNMQ+MG TW+AVGAYNARNPKLR++YA++VY+NIP E + QA
Sbjct: 121 AQNMQRMGLTWDAVGAYNARNPKLRVKYAQKVYKNIPQEVMAQA 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,179
Number of extensions: 20992
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)