BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2383.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310157|ref|YP_003774249.1| dihydrodipicolinate synthase/N-...    94   4e-21
gi|300310152|ref|YP_003774244.1| hypothetical protein Hsero_0817...    69   1e-13
gi|300310109|ref|YP_003774201.1| hypothetical protein Hsero_0774...    68   3e-13

>gi|300310157|ref|YP_003774249.1| dihydrodipicolinate
           synthase/N-acetylneuraminate lyase N-terminal protein
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score = 94.4 bits (233), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 73/151 (48%)

Query: 1   MKETDFRTLVADISRLANTTLPEGVTGHAQLEIDGINFTLMDGAAMEEGSIAYFCDFGPI 60
           M   +F   +  I  LA    P+ +   A +E+D + FTL+D +      +  +CDFGP+
Sbjct: 1   MAIKEFYRFIDKICELARIPHPQSLYERADIEVDEVKFTLVDASGKSGRCMHVYCDFGPL 60

Query: 61  PDNGDRADILQRLLECNLLMFGVGTPTFSVNFETGHAMLMGRAELAQIDAQKLVNAFIHY 120
           P+  DR  +  RLL+ NL  F    P FS++  + H +LM R       A + +N     
Sbjct: 61  PNGPDRQTVCYRLLDLNLECFANREPCFSIDTTSNHVVLMDRVPFDAETALETLNMLAKL 120

Query: 121 ATQARQWQQNHFLESTRRTRSKTQHRLVSAA 151
           A QA+QW+  +FL S       T  R  SAA
Sbjct: 121 AAQAKQWRSGYFLPSEEAASGTTVKRGGSAA 151


>gi|300310152|ref|YP_003774244.1| hypothetical protein Hsero_0817
           [Herbaspirillum seropedicae SmR1]
          Length = 133

 Score = 69.3 bits (168), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 1   MKETDFRTLVADISRLANTTLPEGVTGHAQLEIDGINFTLMDGAAMEEGSIAYFCDFGPI 60
           M  + F  L  D   LA+   PE +     + +DG++F +     +    +  +CDFG  
Sbjct: 1   MSRSRFIELTNDFCELAHVDQPELMVQGNAIAVDGVDFFVQYDEELSPDHLIVYCDFGE- 59

Query: 61  PDNGDRADILQRLLECNLLMFGVGTPTFSVNFETGHAMLMG-RAELAQIDAQKLVNAFIH 119
           P    R +  Q LLE N+L++   +P F +       ++ G +  L ++ A +L+N F++
Sbjct: 60  PPPARRLEAYQALLEANMLIYAANSPAFMLG--PDQRVVFGYQCRLNEVRAPELMNIFLN 117

Query: 120 YATQARQWQQNHFL 133
            A QAR W+ +HFL
Sbjct: 118 LAEQARDWRTDHFL 131


>gi|300310109|ref|YP_003774201.1| hypothetical protein Hsero_0774
           [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score = 68.2 bits (165), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 6   FRTLVADISRLANTTLPEGVTGHAQLEIDGINFTLMDGAAMEEGSIAYFCDFGPIPDNGD 65
           +  LV D+ R        G+    QL ID ++F L  G  +   S+   C FG +P    
Sbjct: 6   YWALVTDLYRQLGIEAAPGMHQAVQLCIDDVDFILFYGGVLAPDSVVMHCTFGALP-TAS 64

Query: 66  RADILQRLLECNLLMFGVGTPTFSVNFETGHAMLMGRAELAQIDAQKLVNAFIH-YATQA 124
           R  IL RLLE    +FGV  P FS +    H  LM R  L      +     +H +A  A
Sbjct: 65  RDRILLRLLETQSHLFGVCAPVFSCDAAQQHITLMCRFPLRDDQPTESTLELLHLFAGMA 124

Query: 125 RQWQQNHFLE 134
            +W+++HFL+
Sbjct: 125 MRWRKDHFLD 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 445,093
Number of extensions: 17058
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 3
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)