BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2376.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309632|ref|YP_003773724.1| MotA/TolQ/ExbB proton channel f...   170   7e-44
gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like ...    69   4e-13

>gi|300309632|ref|YP_003773724.1| MotA/TolQ/ExbB proton channel
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  170 bits (431), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 132/193 (68%), Gaps = 1/193 (0%)

Query: 1   MNAIQLFHELTFYAMYVAAALAVFMIVERQLFFMFSARDALRLLRTMSAKEGAPPVIDAS 60
           MN +QL HEL FY MY  AALA+F+IVER LFF ++ R A  L R M+        + A+
Sbjct: 1   MN-MQLLHELAFYLMYACAALAIFVIVERGLFFGYTMRQATGLERAMTHAVQHLKELPAA 59

Query: 61  LLERQTVPAQLVREALQVQGRAVTQAQREDLGEAIYIAGKKRVNARLWVLDTIVTAAPLL 120
           L  R ++P  LV + L  +    T+   ED  E++YIA +  V  RLW+LDTIVTAAPLL
Sbjct: 60  LTARPSLPLALVSDILAEKHHLTTEKDLEDFSESVYIAKRGEVQQRLWILDTIVTAAPLL 119

Query: 121 GLVGTILGIIDTFAVLASSGISDPSGVSKGIGTALYATALGISIALFGLLFYNYLRECAD 180
           GL+GTILGIIDTF  LA SG+SDP  VS+GIGTALYATALGI IA+ G+ F+N  +E  +
Sbjct: 120 GLLGTILGIIDTFKALAVSGVSDPGQVSQGIGTALYATALGIGIAVVGMFFFNLFQERIE 179

Query: 181 NLNDLLKELLLRS 193
            +ND LK L+LR+
Sbjct: 180 RINDHLKVLMLRA 192


>gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score = 68.6 bits (166), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 4/100 (4%)

Query: 84  TQAQREDLGEAIYIAGK---KRVNARLWVLDTIVTAAPLLGLVGTILGIIDTFAVLASSG 140
             A RE + EAI  AG+    R+   L  L TI + APL+GL GT++G+I+ FA   ++G
Sbjct: 81  VDAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAG 140

Query: 141 ISDPSGVSKGIGTALYATALGISIALFGLLFYNYLRECAD 180
            ++P+ ++ GI  ALY T  G++IA+  L+FY + R   D
Sbjct: 141 -TNPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRALVD 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,935
Number of extensions: 18736
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)