BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2373.p (531 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 303 3e-83 gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbasp... 301 6e-83 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 280 3e-76 gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [H... 270 3e-73 gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbasp... 269 4e-73 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 303 bits (776), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 189/489 (38%), Positives = 282/489 (57%), Gaps = 21/489 (4%) Query: 13 LLELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSCGNIW 72 ++ LR+V K +P G LA DN + AGE+HA++GENGAGKST+MK+L G+ Q G+I Sbjct: 22 VIALRNVCKRFP-GVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 80 Query: 73 LDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRR--GWRIDRKAALQR 130 LDG+P + +P A A GIG++ Q L+L+ S NI +G EPR+ G ID ++ Sbjct: 81 LDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQ 140 Query: 131 VQSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMTLF 190 ++ R LD+DP V +L V QQ V I KAL +RVL++DEP+A L+ E LF Sbjct: 141 AAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELF 200 Query: 191 QVLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETELGSMIVSTA 250 +++R + AQG+ +V ISHK+ E+R +ADR +V+R G+ + +++ S + SM+V A Sbjct: 201 RIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRA 260 Query: 251 ------PPPMPARNRKRATCPLLEVRDLEARHGDGRLALRSLSLDIAAGEILGIAGVEGN 304 PP +RN +LEVR L GR A+R +S + GEILG AG+ G Sbjct: 261 LDGEQRIPPDTSRND-----VVLEVRGL----NRGR-AIRDVSFTLRKGEILGFAGLMGA 310 Query: 305 GQDVLARVLLGLQAASRGEGRLQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMSIAD 364 G+ +AR + G GE + G + S A G+ Y++EDR H G+A M + Sbjct: 311 GRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQA 370 Query: 365 NLIAVTYHKAPFSRYGWLDSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLGR 424 N+ + + F+R G++D AI AA +++ I PS LSGGN QK+V+ + Sbjct: 371 NIALSSMGR--FTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAK 428 Query: 425 EVAAGPRLLIASQPTRGVDIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAVM 484 + +L +PTRG+D+GA ++ L AL EQG AI++IS++L E+L +S RV VM Sbjct: 429 WLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVM 488 Query: 485 ADGALVAHF 493 +G + Sbjct: 489 CEGRITGEL 497 >gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 301 bits (772), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 182/504 (36%), Positives = 288/504 (57%), Gaps = 18/504 (3%) Query: 14 LELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSCGNIWL 73 LE+ V K YP G LAND+V+L++ GEIHA+LGENGAGKST+MK+++G +P G I Sbjct: 8 LEISHVRKAYP-GVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRW 66 Query: 74 DGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRRGWRIDRKAALQRVQS 133 +G+ + +P A GI +V QH L + +VT+NI LG + + D K +R+ Sbjct: 67 NGEAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAK----TDLKELAERITR 122 Query: 134 LVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMTLFQVL 193 +++GL+++P V L VG +QRV I++AL ++L+LDEP++VL+ Q LF L Sbjct: 123 TGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTL 182 Query: 194 RGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETELGSMIV------ 247 R + +G +++ ISHKL EIR + TV+R GRV+G+ R+ S L M++ Sbjct: 183 RRLADEGCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIGDELVR 242 Query: 248 -STAPPPMPARNRKRATCPLLEVRDLEARHGDGRLALRSLSLDIAAGEILGIAGVEGNGQ 306 P RN ++ L + + L+ + ++ AGEI+GIAGV GNGQ Sbjct: 243 LQRERNPESMRNERKLHVNRLSLPKAHLFATE----LKDIECEVRAGEIVGIAGVSGNGQ 298 Query: 307 DVLARVLLGLQAASRGEGRLQGLRFTG-LSVRQVRACGVAYIAEDRMHDGVAAEMSIADN 365 L L G + + G + G LS RA G+ + E+R+ G +S+ N Sbjct: 299 QELLAALSGEDQRAAPHMIMLGSKAVGDLSPNPRRAAGLGLVPEERLGRGAVPTLSLTAN 358 Query: 366 LIAVTYHKAPFSRYGWLDSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLGRE 425 ++ +++ KAP+ + G +D RAA ++++R + A P +LSGGN+QK ++GRE Sbjct: 359 ML-LSHQKAPYVKRGMIDFGFTRRAAASIIERFKVKAAGPDAPAKSLSGGNLQKFIVGRE 417 Query: 426 VAAGPRLLIASQPTRGVDIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAVMA 485 + P + + +QPT GVD+GAA +H ++L L ++G A+L+IS +LDEL +L DR+ V+A Sbjct: 418 MERKPAVFVVAQPTWGVDVGAAAQIHGEILKLKQEGCAVLVISEELDELFALCDRLHVIA 477 Query: 486 DGALVAHFDAAGLGADVLGPYLTG 509 G L + +G +++G Sbjct: 478 KGRLSPSIPIEQATREQVGVWMSG 501 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 280 bits (715), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 186/497 (37%), Positives = 282/497 (56%), Gaps = 17/497 (3%) Query: 9 TPGALLELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSC 68 T LL++R + K + TLA +++L+IR GEIHA++GENGAGKST+MK+L G+ P Sbjct: 2 TQTPLLQMRGIRKSF-GATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQ 60 Query: 69 GNIWLDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPR-RGWRIDRKAA 127 G I LDG+P L DP + AAGI L+ Q L + P+ SV N+ +G+E R R ID A Sbjct: 61 GEILLDGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAM 120 Query: 128 LQRVQSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAM 187 R +++++ G L + QQ+V I +AL +R++++DEP+A LS +E Sbjct: 121 RSRTDAVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETE 180 Query: 188 TLFQVLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETE-LGSMI 246 LF V+R + +GL ++ ISH++ E+ +ADR TVLR G G LVRD ++E + M+ Sbjct: 181 QLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGE-LVRDEIDSERIVQMM 239 Query: 247 VSTAPPPMPARNR----KRATCP-LLEVRDLEARHGDGRLALRSLSLDIAAGEILGIAGV 301 V + R A P +++VR L G+ +R S D+ AGE+LG AG+ Sbjct: 240 VGRSLSEFYQHQRIAPADAAQLPTVMQVRAL----AGGK--IRPASFDVRAGEVLGFAGL 293 Query: 302 EGNGQDVLARVLLGLQAASRGEGRLQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMS 361 G G+ LAR+L G S G+ L+G R G+AY+ EDR G+ +M+ Sbjct: 294 VGAGRTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMA 353 Query: 362 IADNLIAVTYHKAPFSRYGWLDSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLV 421 +A N A + +R G + S ++G A A +QR + P T +G LSGGN QK++ Sbjct: 354 VAAN--ATMNVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVL 411 Query: 422 LGREVAAGPRLLIASQPTRGVDIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRV 481 L R + P++LI +PTRGVDI A ++ + L QG A+++IS++L E++ + DRV Sbjct: 412 LARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRV 471 Query: 482 AVMADGALVAHFDAAGL 498 VM +G + A + Sbjct: 472 LVMREGMITGELAGAAI 488 >gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 270 bits (689), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 269/493 (54%), Gaps = 13/493 (2%) Query: 13 LLELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGL--EQPSCGN 70 +LE+R + K +P G A +NVNL++R GEIHAI+GENGAGKST+MK+L G+ G+ Sbjct: 4 ILEMRGIEKSFP-GVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGD 62 Query: 71 IWLDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRRGWRIDRKAALQR 130 I G+ R D + GI ++ Q L L+P SV +N+ LG E RG ID + + R Sbjct: 63 IVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSYVR 122 Query: 131 VQSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMTLF 190 + L+ + GL PL +V DL VG QQ + I KAL + ++L+LDEP+A L+ ++ L Sbjct: 123 AKELLAKVGLKESPLTQVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALL 182 Query: 191 QVLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETE---LGSMIV 247 ++L + QG+ +LISHKL EI VAD TVLR G + R +E + M+ Sbjct: 183 ELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHMVG 242 Query: 248 STAPPPMPARNRKRATCPLLEVRDLEARH--GDGRLALRSLSLDIAAGEILGIAGVEGNG 305 P R+ + + EVRD H RLA++ +++ + AGEI+GIAG+ G G Sbjct: 243 REMADRYPQRDPQIGEV-IFEVRDWRVHHPLHTDRLAIKDVNMSVRAGEIVGIAGLMGAG 301 Query: 306 QDVLARVLLGLQAASR--GEGRLQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMSIA 363 + LA+ + G + G+ L G ++ + A G+AY+ EDR DG+ E I Sbjct: 302 RTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIAKGIAYVTEDRKGDGLVLEEDIK 361 Query: 364 DNLIAVTYHKAPFSRYGWLDSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLG 423 N+ S +D + A Q+ I S + LSGGN QK+VL Sbjct: 362 KNISLANL--GGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLS 419 Query: 424 REVAAGPRLLIASQPTRGVDIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAV 483 + + + P +LI +PTRG+D+GA +++ + L +G I++IS+++ ELL + DR+ V Sbjct: 420 KWLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYV 479 Query: 484 MADGALVAHFDAA 496 M +G V H A Sbjct: 480 MNEGQFVGHLPKA 492 >gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 269 bits (688), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 192/502 (38%), Positives = 274/502 (54%), Gaps = 35/502 (6%) Query: 31 DNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSCGNIWLDGQPRVLPDPAHAIAAG 90 D V+L IRAG IHA+LGENGAGKST++K L G G+I D + + G Sbjct: 22 DEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILADRREVDIRSARVPNQLG 81 Query: 91 IGLVPQHLHLLPSFSVTDNIVLGAEPRRG---WRIDRKAALQRVQSLVQRFGLDVDPLAR 147 IG+V QH L PS +V +N++L RG WRI + ++ + + + P Sbjct: 82 IGMVYQHFTLAPSLTVAENLLLA----RGDLPWRIRWSSERAVLEEFMAKMPFKLSPERT 137 Query: 148 VRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMTLFQVLRGMV-AQGLTVVLI 206 V L G +Q++ ILK LY R L+LDEP++VL+ QEA + ++ + Q LTV++I Sbjct: 138 VSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHALTRQQELTVLMI 197 Query: 207 SHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETELGSMIVSTAPPPMPARNRK----RA 262 +HK E+ AD TVLRKGR+ GS V + S L ++ A R K R Sbjct: 198 THKFHEVSAYADDVTVLRKGRLVGSARVAETSPDMLAHWMMGQA------RAEKAQVARP 251 Query: 263 TCPL-----LEVRDLEARHGDGRLALRSLSLDIAAGEILGIAGVEGNGQDVLARVLLGLQ 317 P+ LEVRDL + G A+R+LSL + GEI+G+AG+ GNGQ L LLG + Sbjct: 252 AVPVQASVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQKELVEALLGQR 311 Query: 318 AASRGEGRLQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMSIADNLIAVTYHKAPFS 377 GE R++G + + ++R V + E+ + + A MS+A+N+ + APF Sbjct: 312 RLLLGEIRVEGAPYAA-TREEMRRLRVFALPEEPLRNACIAGMSVAENMALRNFDVAPFK 370 Query: 378 RYGW-LDSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLGREVA-----AGPR 431 R GW +D +A+ R A AL+ + P P IG LSGGN+Q+ VL RE+ Sbjct: 371 RGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLARELGEDGQDGAAN 430 Query: 432 LLIASQPTRGVDIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAVMADGALVA 491 +LI + P G+D + +H +LL +GAA+LL+S DLDELL LSDR+ VM +G +V Sbjct: 431 VLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRILVMTEGRIV- 489 Query: 492 HF--DAAGLGAD--VLGPYLTG 509 H D A GAD LG ++ G Sbjct: 490 HVAQDVAKEGADRAALGRWMAG 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,709,527 Number of extensions: 77512 Number of successful extensions: 921 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 603 Number of HSP's successfully gapped: 194 Length of query: 531 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 441 Effective length of database: 1,193,720 Effective search space: 526430520 Effective search space used: 526430520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)