BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2372.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...   102   4e-23

>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 138/282 (48%), Gaps = 14/282 (4%)

Query: 84  DTITLSLLGLAVLIPFRAEQFSLGADGQLFLGALAATVVSLYLPGPWFVV-----LPLSL 138
            ++ L L  L + + FRA  +++GA+GQ  +GAL +  + ++L  P   V     L L +
Sbjct: 72  KSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGVSGGMGLVLMI 131

Query: 139 MAACVTGFLWGSLPGLLKTRFQANEIVSTLMLNIVAVQAYRWLVSGWLRDPSG-GFIVTP 197
           +A  + G LW ++   L+ +F ANEI+ +LML  VA     W V+G L+DP+G  F  + 
Sbjct: 132 VAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNFPQSK 191

Query: 198 FLPTSLQLPVLL----VHTNVTVMLLALPLLVWGTWLLLMRTTLGYEIRVVGQAPAFALQ 253
              +   LP L+    +H    V ++A  L+     + +MR+  G+ + V G AP  A  
Sbjct: 192 VFSSEFMLPTLISGTRLHIGFAVAIVAAVLMA----IFMMRSLRGFSLMVGGVAPHAARY 247

Query: 254 AGLPVQRTVWLSMGLGGVLAALAGMHVSHGLLKRLPVDLPTGLGYEGLLVALLARCEPRA 313
           AG   +  +W+S+ + G  A LAG     G + +L   +  G G+  ++VA + R  P  
Sbjct: 248 AGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPIG 307

Query: 314 VPWAALMYAYLRTGALAMERSTDVSREVVLVIQALVILFLVA 355
                L+ + L  G    +    +   +  V Q +++  L+A
Sbjct: 308 AILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLA 349


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 997,583
Number of extensions: 39580
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)