BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2369.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311612|ref|YP_003775704.1| sugar kinase [Herbaspirillum se...    78   1e-15
gi|300311742|ref|YP_003775834.1| transferase kinase [Herbaspiril...    56   4e-09

>gi|300311612|ref|YP_003775704.1| sugar kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 299

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 134/302 (44%), Gaps = 18/302 (5%)

Query: 8   ILTLGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRL---GMRCAQFGR 64
           I+ +G    DL+LR   +P PG    G     +PGG  AN A A +RL   G R A    
Sbjct: 2   IVIIGSVNMDLVLRVPRMPLPGETLAGDRFMTIPGGKGANQAVACARLAAPGTRVAMVAC 61

Query: 65  VGDDPNARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMPMPAVAPDEE 124
           VGDD     +R S+   G+   ++      A+  A  ++  + + SI+         D E
Sbjct: 62  VGDDAFGGQMRQSITACGIDDRYIDEVAGEATGIASIMVDANAQNSIVIAAGANGRLDVE 121

Query: 125 ALKTA---VSQSRLVY-AMPYDLAELEMVSRLAHAAGTLVAIDLEAAVAPNATEMWRRAS 180
            ++ A   + Q+ +V   +   +A +     LAHA G  V ++      P   +   RA 
Sbjct: 122 RIERARALIEQASIVLLQLEVPMATVIHSIELAHALGKTVVLN------PAPAQALPRAL 175

Query: 181 LA--DIVFFNE--SGFCKATGMAPSPQVLTEALRLGPSEIIVTMGEGGAIGAARTSSARH 236
           L   D +  NE  +           P +  +   LG   ++VT+GE G  G+      RH
Sbjct: 176 LQKIDYLILNEIEAAMLAEEQSEDIPMLARKLHDLGARNVVVTLGEKGVYGSFADGQQRH 235

Query: 237 A-AFPVQVVDTTGAGDCFNAAYLSTRLKGQPLSLALRFACAAASCAVSALGARQGLPDQG 295
             A  VQ VDTT AGD F   ++    +G+    A+ +A AAA+ +V+ +GA+  +P + 
Sbjct: 236 LPARKVQAVDTTAAGDTFIGGFIGAIAQGRDQFEAIAYAQAAAALSVTRVGAQTSIPTRD 295

Query: 296 SV 297
            V
Sbjct: 296 EV 297


>gi|300311742|ref|YP_003775834.1| transferase kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 657

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 123/315 (39%), Gaps = 39/315 (12%)

Query: 3   SRPYDILTLGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRLGMRCAQF 62
            R  D++ +G    DL  +    P     +  ++LG    G++AN+A   +RLG++ A  
Sbjct: 18  DRRLDLICIGRLAVDLYAQQVGAPLSDVSSFAKYLG----GSSANIAFGCARLGLKSAML 73

Query: 63  GRVGDDPNARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMPMP----A 118
            R+GD+ N + L+  L   G     ++V PQ  +A  +  L       +I+        A
Sbjct: 74  ARIGDEANGQFLKAELAAEGCDVSHVTVDPQRLTALVMLGLKDKDSFPLIFYRDNCADMA 133

Query: 119 VAPD--EEALKTAVSQSRLVYAMPYDLAELEMVSRLA------HAAGTLVAIDLEAA--- 167
           +AP+  +EA   A S++ L+    +   ++   S LA      H   T++ ID       
Sbjct: 134 LAPEDIDEAF-IASSKALLITGTHFSTPQVHRSSSLALQYARRHNVRTVLDIDYRPVLWG 192

Query: 168 -----------VAPNATEMWRRASL--ADIVFFNESGFCKATGMAPSPQVLTEALRLGPS 214
                      +A +      +  L   D+V   E  F  A G       L     L  +
Sbjct: 193 LTSKGDGETRFIASDGVTQHLQGILPQFDLVVGTEEEFMIAGGSTDIMAALRAVRALCAA 252

Query: 215 EIIVTMGE------GGAIGAARTSSARHAAFPVQVVDTTGAGDCFNAAYLSTRLKGQPLS 268
            ++V  G        GAI         +    V+V++  GAGD F + +L   L  +   
Sbjct: 253 TLVVKRGPLGCVVLHGAIPERLDDGFHYRGVQVEVLNVLGAGDAFISGFLKGWLNEEDDE 312

Query: 269 LALRFACAAASCAVS 283
              R+A A  +  VS
Sbjct: 313 HCCRYANACGALVVS 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 928,366
Number of extensions: 36134
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 4
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)