BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2363.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312181|ref|YP_003776273.1| coenzyme F420-dependent N5,N10-...   625   e-180
gi|300313077|ref|YP_003777169.1| coenzyme F420-dependent N5,N10-...    67   2e-12

>gi|300312181|ref|YP_003776273.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  625 bits (1613), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 325/333 (97%), Positives = 328/333 (98%)

Query: 1   MPDRQQRYGVFLNVENPHGNARDALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALM 60
           MPD  QRYGVFLNVENPHGNARDALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALM
Sbjct: 1   MPDYPQRYGVFLNVENPHGNARDALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALM 60

Query: 61  VLLAQIAARTSRIRLGTGASLLALNDPLRVAEDVATLDLLSNGRMEFGVARGGPFPEQYR 120
           VLLAQIAARTSRIRLGTGASLLALNDPLRVAEDVATLDLLSNGRMEFGVARGGPFPEQYR
Sbjct: 61  VLLAQIAARTSRIRLGTGASLLALNDPLRVAEDVATLDLLSNGRMEFGVARGGPFPEQYR 120

Query: 121 HAGLSGADQARARMIEALDVIQRAWQGVPFSTEGRFFHYDRVQLQPQPLQCPIPVWLASM 180
           HAGLSGADQARARMIEALDVIQRAWQGVPFSTEGRFFHYDRVQLQPQPLQ PIPVWLASM
Sbjct: 121 HAGLSGADQARARMIEALDVIQRAWQGVPFSTEGRFFHYDRVQLQPQPLQRPIPVWLASM 180

Query: 181 SEDSLDLAARQDYGLMATPSADLEQVVTRVAAQRAQRGQFPFAIARFFHCEPEAHKALAH 240
           SEDSLDLAARQDYGLMATPSADLEQV+TRVAAQRAQRG FPFAIARFFHCEPEAHKALAH
Sbjct: 181 SEDSLDLAARQDYGLMATPSADLEQVLTRVAAQRAQRGHFPFAIARFFHCEPEAHKALAH 240

Query: 241 GLAGVRAYPRMMQVQFAPGGTPPMFQTDASDQVILANAIIGDPAQCVARIGQLQKQLGPH 300
           GLAGVRAYPRMMQVQFAPGGTPPMFQ DASDQVILANAIIGDPAQCVARIGQLQ++LGPH
Sbjct: 241 GLAGVRAYPRMMQVQFAPGGTPPMFQADASDQVILANAIIGDPAQCVARIGQLQEKLGPH 300

Query: 301 RLLLKPASHDPQQARAALSLLAGALGLQPSART 333
           RLLLKPASHDPQQARAALSLLAGALGLQPSART
Sbjct: 301 RLLLKPASHDPQQARAALSLLAGALGLQPSART 333


>gi|300313077|ref|YP_003777169.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 7/119 (5%)

Query: 16  NPHGNARDALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALMVLLAQIAARTSRIRL 75
           N    A  A   + + A  AEALGYH  W+AEHH       +A  ++++ +AA T  IR+
Sbjct: 13  NQGSTAAQAFNNSKELAQRAEALGYHRYWLAEHHNMPGIASAATALVISHVAANTRSIRV 72

Query: 76  GTGASLLALNDPLRVAEDVATLDLLSNGRMEFGVARGGPFPEQ------YRHAGLSGAD 128
           G+G  +L  + PL +AE   TL+ L  GR++ G+ R  P  +Q       RH G   AD
Sbjct: 73  GSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGR-APGSDQRTARALRRHMGGDTAD 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,025,689
Number of extensions: 43100
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)