BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2358.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312176|ref|YP_003776268.1| Rhizobium etli IscN protein [He...   243   3e-66
gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142...    58   2e-10
gi|300312140|ref|YP_003776232.1| transcription regulator protein...    55   1e-09

>gi|300312176|ref|YP_003776268.1| Rhizobium etli IscN protein
           [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  243 bits (621), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/124 (96%), Positives = 121/124 (97%)

Query: 1   MNITITPAAEKFMRRMVRFNGGSVQSGFRLKVSAGGCSGLSSEFSVQAQPTPGDVSFDCN 60
           MNITITPAAEKFMRRMVRFNGGS QSGFRL+VSAGGCSGLSSEFSVQAQPTPGDVS DCN
Sbjct: 1   MNITITPAAEKFMRRMVRFNGGSAQSGFRLQVSAGGCSGLSSEFSVQAQPTPGDVSLDCN 60

Query: 61  GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCGTHGSTPPATAAVSISSI 120
           GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCGTHGS PPATAAVSISSI
Sbjct: 61  GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCGTHGSAPPATAAVSISSI 120

Query: 121 RRKA 124
           RRKA
Sbjct: 121 RRKA 124


>gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142
           [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 1   MNITITPAAEKFMRRMVRFNGGSVQSGFRLKVSAGGCSGLSSEFSVQAQPTPGDVSFDCN 60
           M IT+T  A K + R +   G  +  G RL V   GCSGL+ +     + +  D  F+ +
Sbjct: 1   MAITLTEKAAKHISRYMERRGKGI--GLRLGVRTTGCSGLAYKLEYVDEQSSEDTVFESH 58

Query: 61  GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCG 103
           G+ VF+  +S   ++G  +DFA      G  F+NPN     CG
Sbjct: 59  GVRVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVK-DECG 100


>gi|300312140|ref|YP_003776232.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score = 55.5 bits (132), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 1   MNITITPAAEKFMRRMVRFNGGSVQSGFRLKVSAGGCSGLSSEFSVQAQPTPGDVSFDCN 60
           M+IT+T   E   RR+  F       G RL V   GCSG++          P DV F+ +
Sbjct: 1   MSITLT---ENAARRVHAFLAKRSAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESH 57

Query: 61  GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCG 103
           G+ V +  +S   L+G  +DF       G  F NPNA    CG
Sbjct: 58  GVTVLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAK-NQCG 99


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 390,473
Number of extensions: 14478
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)