BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2349.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312167|ref|YP_003776259.1| ferredoxin [2Fe-2S]-type protei...   201   7e-54
gi|300312438|ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protei...    69   1e-13
gi|300312142|ref|YP_003776234.1| ferredoxin [2Fe-2S]-type protei...    65   7e-13

>gi|300312167|ref|YP_003776259.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score =  201 bits (512), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%)

Query: 1   MPVVTIQPSGKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRKSVSRTT 60
           MPVVTIQPSGKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRKSVSRTT
Sbjct: 1   MPVVTIQPSGKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRKSVSRTT 60

Query: 61  PAENAKLDSIVGVGSKSRLACQVIVGEEDVTLELLNFASGR 101
           P+ENAKLDSIVGVGSKSRLACQVIVGEEDVTLELLNFASGR
Sbjct: 61  PSENAKLDSIVGVGSKSRLACQVIVGEEDVTLELLNFASGR 101


>gi|300312438|ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%)

Query: 1   MPVVTIQPSGKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRKSVSRTT 60
           +P   + P G  I+   G TL  A++ +   I + C+    C  CH+ + EG +++   T
Sbjct: 7   LPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFETLDDPT 66

Query: 61  PAENAKLDSIVGVGSKSRLACQVIVGEEDVTLELLNF 97
             E   LD   G+ + SRL+CQV++GE+D+T+E+  +
Sbjct: 67  DKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKY 103


>gi|300312142|ref|YP_003776234.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 65.5 bits (158), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 1   MPVVTIQPS------GKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRK 54
           MP +T++P       G + +   G  L  A++K G A+ + C+    C  CH+ V EG  
Sbjct: 1   MPHITVRPHPVLCAEGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEGYD 60

Query: 55  SVSRTTPAENAKLDSIVGVGSKSRLACQVIVGEEDVTLEL----LNFASGR 101
           S++     E  +L    G+ ++SRLACQV++ ++D+ +EL    +N A  R
Sbjct: 61  SLAPAGDDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARER 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 275,379
Number of extensions: 8976
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)