BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2342.p
         (484 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312160|ref|YP_003776252.1| nitrogenase molybdenum-iron pro...  1004   0.0  
gi|300312158|ref|YP_003776250.1| nitrogenase molybdenum-cofactor...   244   8e-66

>gi|300312160|ref|YP_003776252.1| nitrogenase molybdenum-iron
           protein subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/484 (99%), Positives = 483/484 (99%)

Query: 1   MSLTVEETTARNTELINEVLKAYPDKTAKRRAKHLTTQEEGKSDCNVKSNIKSIPGVMTI 60
           MSLTVEETTARNTELINEVLKAYPDKTAKRRAKHLTTQEEGKSDCNVKSNIKSIPGVMTI
Sbjct: 1   MSLTVEETTARNTELINEVLKAYPDKTAKRRAKHLTTQEEGKSDCNVKSNIKSIPGVMTI 60

Query: 61  RGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSWGSRRNYYIGKTGIDSFVTMQFTSDFQ 120
           RGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSWGSRRNYYIGKTGIDSFVTMQFTSDFQ
Sbjct: 61  RGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSWGSRRNYYIGKTGIDSFVTMQFTSDFQ 120

Query: 121 EKDIVFGGDKKLEKIVDEIQELFPLNKGISVQSECPIGLIGDDIEAVSKKKSKQYDGHTI 180
           EKDIVFGGDKKLEKIVDEIQELFPLNKGISVQSECPIGLIGDDIEAVSKKKSKQY+GHTI
Sbjct: 121 EKDIVFGGDKKLEKIVDEIQELFPLNKGISVQSECPIGLIGDDIEAVSKKKSKQYEGHTI 180

Query: 181 VPVRCEGFRGVSQSLGHHVANDAIKEWVLDKMDPDKNQFVATPYDVAIIGDYNIGGDAWS 240
           VPVRCEGFRGVSQSLGHHVANDAIKEWVLDKMDPDKNQFVATPYDVAIIGDYNIGGDAWS
Sbjct: 181 VPVRCEGFRGVSQSLGHHVANDAIKEWVLDKMDPDKNQFVATPYDVAIIGDYNIGGDAWS 240

Query: 241 SRILLEEIGLRVIAQWSGDGTLAEMENTPKAKLNVLHCYRSMNYISRHMEEKFGIPWVEY 300
           SRILLEEIGLRVIAQWSGDGTLAEMENTPKAKLNVLHCYRSMNYISRHMEEKFGIPWVEY
Sbjct: 241 SRILLEEIGLRVIAQWSGDGTLAEMENTPKAKLNVLHCYRSMNYISRHMEEKFGIPWVEY 300

Query: 301 NFFGPSQIETSLRQIASHFDDKIKEGAERVIAKYKALTDAVIAKYRPRLEGKTVMLFVGG 360
           NFFGPSQIE SLRQIASHFDDKIKEGAERVIAKYKALTDAVIAKYRPRLEGKTVMLFVGG
Sbjct: 301 NFFGPSQIEASLRQIASHFDDKIKEGAERVIAKYKALTDAVIAKYRPRLEGKTVMLFVGG 360

Query: 361 LRPRHVIDAYGDLGMKVVGTGYEFGHNDDYQRTTHYVEDGTLIYDDVTSYEFEKFVEKIE 420
           LRPRHVIDAYGDLGMKVVGTGYEFGHNDDYQRTTHYVEDGTLIYDDVTSYEFEKFVEKIE
Sbjct: 361 LRPRHVIDAYGDLGMKVVGTGYEFGHNDDYQRTTHYVEDGTLIYDDVTSYEFEKFVEKIE 420

Query: 421 PDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSPVWGMAKA 480
           PDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSPVWGMAKA
Sbjct: 421 PDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSPVWGMAKA 480

Query: 481 PWKA 484
           PWKA
Sbjct: 481 PWKA 484


>gi|300312158|ref|YP_003776250.1| nitrogenase molybdenum-cofactor
           synthesis protein [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  244 bits (624), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 137/415 (33%), Positives = 240/415 (57%), Gaps = 23/415 (5%)

Query: 75  PIKDMIHISHGPVGCGQYSWGSRRNYYIGKTGIDSFVTMQFTSDFQEKDIVFGGDKKLEK 134
           PI D+ H+ HGP+ C   SW +R   +   +G+ ++ T  FT+D  E D+++GG+K+L K
Sbjct: 56  PIVDVAHLVHGPIACEGNSWDNR---HAASSGVQTYRT-GFTTDINELDVIYGGEKRLYK 111

Query: 135 IVDEIQELFPLNKGISVQSECPIGLIGDDIEAVSKKKSKQYDGHTIVPVRCEGFRGVSQS 194
            V EI E +     + V   C   L GDDIEAV K  S ++ G  ++PV   GF GV ++
Sbjct: 112 AVKEIIEKYD-PPAVFVYQTCVTALTGDDIEAVCKAASAKF-GKPVIPVNSPGFAGV-KN 168

Query: 195 LGHHVANDAIKEWVLDKMDPDKNQFVATPYDVAIIGDYNIGGDAWSSRILLEEIGLRVIA 254
           LG+ +A +A+ ++V+  ++P+      TPYD+ IIG+YN+ G+ W    LL+ +G+RV++
Sbjct: 169 LGNKLAGEALLDYVIGTVEPE----FTTPYDINIIGEYNLSGELWQITPLLDAMGVRVLS 224

Query: 255 QWSGDGTLAEMENTPKAKLNVLHCYRSMNYISRHMEEKFGIPWVEYNFFGPSQIETSLRQ 314
             SGDG   E+ ++ +A+ +++ C ++M  ++R MEE++GIP+ E +F+G   +  SLRQ
Sbjct: 225 CISGDGRYREIASSHRARASMMVCSKAMINVARKMEERYGIPFFEGSFYGIGDVSDSLRQ 284

Query: 315 IASHFDDKIKEGA--------ERVIAKYKALTDAVIAKYRPRLEGKTVMLFVGGLRPRHV 366
           IA      +++GA        E +IA  +A   + +A Y+ RL GK V+L  GG++   V
Sbjct: 285 IARLL---VQQGAPAELMDRTEALIAVEEARAWSRLAHYKKRLAGKRVLLITGGVKSWSV 341

Query: 367 IDAYGDLGMKVVGTGYEFGHNDDYQRTTHYVEDGTLIYDDVTSYEFEKFVEKIEPDLVGS 426
           + A  ++G+++VGT  +    +D +R    + D   + DD+T  E    +++   D++ S
Sbjct: 342 VAALQEVGIEIVGTSVKKSTREDKERIKEIMGDEAHMIDDMTPREMYAMLKEARADIMLS 401

Query: 427 GIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSPVWGMAKAP 481
           G + +++  K  +P+  ++   +   Y GY+G      ++D A+ +PVW   +AP
Sbjct: 402 GGRSQFIALKAKMPWLDINQERHHA-YAGYEGMITLVSEIDRALYNPVWEQVRAP 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,563,386
Number of extensions: 67691
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 484
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 395
Effective length of database: 1,198,455
Effective search space: 473389725
Effective search space used: 473389725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)