BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2340.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312158|ref|YP_003776250.1| nitrogenase molybdenum-cofactor...   942   0.0  
gi|300312160|ref|YP_003776252.1| nitrogenase molybdenum-iron pro...   252   6e-68

>gi|300312158|ref|YP_003776250.1| nitrogenase molybdenum-cofactor
           synthesis protein [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/459 (99%), Positives = 457/459 (99%)

Query: 1   MTALKLKIQEVFEEPACEKNQAKMEKQRKAGCSKQLAPGAAAGGCAFDGAKIALQPIVDV 60
           MTALKLKIQEVFEEPACEKNQAK EKQRKAGCSKQLAPGAAAGGCAFDGAKIALQPIVDV
Sbjct: 1   MTALKLKIQEVFEEPACEKNQAKTEKQRKAGCSKQLAPGAAAGGCAFDGAKIALQPIVDV 60

Query: 61  AHLVHGPIACEGNSWDNRHAASSGVQTYRTGFTTDINEIDVIYGGEKRLYKAVKEIIEKY 120
           AHLVHGPIACEGNSWDNRHAASSGVQTYRTGFTTDINE+DVIYGGEKRLYKAVKEIIEKY
Sbjct: 61  AHLVHGPIACEGNSWDNRHAASSGVQTYRTGFTTDINELDVIYGGEKRLYKAVKEIIEKY 120

Query: 121 DPPAVFVYQTCVTALTGDDIEAVCKAASAKFGKPVIPVNSPGFAGVKNLGNKLAGEALLD 180
           DPPAVFVYQTCVTALTGDDIEAVCKAASAKFGKPVIPVNSPGFAGVKNLGNKLAGEALLD
Sbjct: 121 DPPAVFVYQTCVTALTGDDIEAVCKAASAKFGKPVIPVNSPGFAGVKNLGNKLAGEALLD 180

Query: 181 YVIGTVEPEFTTPYDINIIGEYNLSGELWQITPLLDAMGVRVLSCISGDGRYREIASSHR 240
           YVIGTVEPEFTTPYDINIIGEYNLSGELWQITPLLDAMGVRVLSCISGDGRYREIASSHR
Sbjct: 181 YVIGTVEPEFTTPYDINIIGEYNLSGELWQITPLLDAMGVRVLSCISGDGRYREIASSHR 240

Query: 241 ARASMMVCSKAMINVARKMEERYGIPFFEGSFYGIGDVSDSLRQIARLLVQQGAPAELTN 300
           ARASMMVCSKAMINVARKMEERYGIPFFEGSFYGIGDVSDSLRQIARLLVQQGAPAEL +
Sbjct: 241 ARASMMVCSKAMINVARKMEERYGIPFFEGSFYGIGDVSDSLRQIARLLVQQGAPAELMD 300

Query: 301 RTEALIAVEEARAWSRLAHYKKRLAGKRVLLITGGVKSWSVVAALQEVGIEIVGTSVKKS 360
           RTEALIAVEEARAWSRLAHYKKRLAGKRVLLITGGVKSWSVVAALQEVGIEIVGTSVKKS
Sbjct: 301 RTEALIAVEEARAWSRLAHYKKRLAGKRVLLITGGVKSWSVVAALQEVGIEIVGTSVKKS 360

Query: 361 TREDKERIKEIMGDEAHMIDDMTPREMYAMLKEARADIMLSGGRSQFIALKAKMPWLDIN 420
           TREDKERIKEIMGDEAHMIDDMTPREMYAMLKEARADIMLSGGRSQFIALKAKMPWLDIN
Sbjct: 361 TREDKERIKEIMGDEAHMIDDMTPREMYAMLKEARADIMLSGGRSQFIALKAKMPWLDIN 420

Query: 421 QERHHAYAGYEGMITLVSEIDRALYNPVWEQVRAPAPWE 459
           QERHHAYAGYEGMITLVSEIDRALYNPVWEQVRAPAPWE
Sbjct: 421 QERHHAYAGYEGMITLVSEIDRALYNPVWEQVRAPAPWE 459


>gi|300312160|ref|YP_003776252.1| nitrogenase molybdenum-iron
           protein subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  252 bits (643), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 248/428 (57%), Gaps = 24/428 (5%)

Query: 44  GCAFDGAK-IALQPIVDVAHLVHGPIACEGNSWDNR---HAASSGVQTYRT-GFTTDINE 98
           GCA+ G+K +   PI D+ H+ HGP+ C   SW +R   +   +G+ ++ T  FT+D  E
Sbjct: 62  GCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSWGSRRNYYIGKTGIDSFVTMQFTSDFQE 121

Query: 99  IDVIYGGEKRLYKAVKEIIEKYD-PPAVFVYQTCVTALTGDDIEAVCKAASAKF-GKPVI 156
            D+++GG+K+L K V EI E +     + V   C   L GDDIEAV K  S ++ G  ++
Sbjct: 122 KDIVFGGDKKLEKIVDEIQELFPLNKGISVQSECPIGLIGDDIEAVSKKKSKQYEGHTIV 181

Query: 157 PVNSPGFAGV-KNLGNKLAGEALLDYVIGTVEPE----FTTPYDINIIGEYNLSGELWQI 211
           PV   GF GV ++LG+ +A +A+ ++V+  ++P+      TPYD+ IIG+YN+ G+ W  
Sbjct: 182 PVRCEGFRGVSQSLGHHVANDAIKEWVLDKMDPDKNQFVATPYDVAIIGDYNIGGDAWSS 241

Query: 212 TPLLDAMGVRVLSCISGDGRYREIASSHRARASMMVCSKAMINVARKMEERYGIPFFEGS 271
             LL+ +G+RV++  SGDG   E+ ++ +A+ +++ C ++M  ++R MEE++GIP+ E +
Sbjct: 242 RILLEEIGLRVIAQWSGDGTLAEMENTPKAKLNVLHCYRSMNYISRHMEEKFGIPWVEYN 301

Query: 272 FYGIGDVSDSLRQIARLL---VQQGAPAELTNRTEALIAVEEARAWSRLAHYKKRLAGKR 328
           F+G   +  SLRQIA      +++GA        E +IA  +A   + +A Y+ RL GK 
Sbjct: 302 FFGPSQIEASLRQIASHFDDKIKEGA--------ERVIAKYKALTDAVIAKYRPRLEGKT 353

Query: 329 VLLITGGVKSWSVVAALQEVGIEIVGTSVKKSTREDKERIKEIMGDEAHMIDDMTPREMY 388
           V+L  GG++   V+ A  ++G+++VGT  +    +D +R    + D   + DD+T  E  
Sbjct: 354 VMLFVGGLRPRHVIDAYGDLGMKVVGTGYEFGHNDDYQRTTHYVEDGTLIYDDVTSYEFE 413

Query: 389 AMLKEARADIMLSGGRSQFIALKAKMPWLDINQERHHA-YAGYEGMITLVSEIDRALYNP 447
             +++   D++ SG + +++  K  +P+  ++   +   Y GY+G      ++D A+ +P
Sbjct: 414 KFVEKIEPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSP 473

Query: 448 VWEQVRAP 455
           VW   +AP
Sbjct: 474 VWGMAKAP 481


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,413,721
Number of extensions: 59200
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 2
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)