BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2333.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312151|ref|YP_003776243.1| molybdate ABC transporter perip...   501   e-143
gi|300311433|ref|YP_003775525.1| molybdate ABC transporter perip...    69   3e-13

>gi|300312151|ref|YP_003776243.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  501 bits (1289), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/251 (97%), Positives = 250/251 (99%)

Query: 1   MLRTLMLACTWLWLLIPVVHAEEIHVAVAANFTQPFKQIAAAFEQATGNKVVAAFGSTGQ 60
           MLRTLMLACTWLWLL+PVVHAEE+HVAVAANFTQPFKQIAAAFEQATG+KVVAAFGSTGQ
Sbjct: 1   MLRTLMLACTWLWLLMPVVHAEEVHVAVAANFTQPFKQIAAAFEQATGHKVVAAFGSTGQ 60

Query: 61  FYAQINNGAPFEILLAADADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVDAQGEI 120
           FYAQINNGAPFEILLAADADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVDAQGEI
Sbjct: 61  FYAQINNGAPFEILLAADADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVDAQGEI 120

Query: 121 LKKGAFEHLSLANPKLAPYGLAGVQTMQKLGLEETLRPKIVQAENINQAYQFIASGNALL 180
           LKKGAFEHLSLANPKLAPYGLAGVQTMQKLGLEE LRPKIVQAEN+NQAYQFIASGNALL
Sbjct: 121 LKKGAFEHLSLANPKLAPYGLAGVQTMQKLGLEEALRPKIVQAENVNQAYQFIASGNALL 180

Query: 181 GFVALSQVVRNGQIADGSAWIVPAELYAPILQDAVLLEKGRDHPAALALMTYLKSEPARQ 240
           GFVALSQVVRNGQIADGSAWIVPA+LYAPILQDAVLLEKGRDHPAALALMTYLKSEPARQ
Sbjct: 181 GFVALSQVVRNGQIADGSAWIVPADLYAPILQDAVLLEKGRDHPAALALMTYLKSEPARQ 240

Query: 241 VIRGYGYELDR 251
           VIRGYGYELDR
Sbjct: 241 VIRGYGYELDR 251


>gi|300311433|ref|YP_003775525.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score = 68.9 bits (167), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 5/180 (2%)

Query: 8   ACT-WLWLLIPVVHAEEIHVAVAANFTQPFKQIAAAFEQA-TGNKVVAAFGSTGQFYAQI 65
           AC   L L      A ++ V+ AA+ T  FK++A +FEQ   G KVV+ FG++     QI
Sbjct: 14  ACAATLMLAAGAAQAADLVVSAAASLTNAFKELAQSFEQQHPGVKVVSNFGASDILMRQI 73

Query: 66  NNGAPFEILLAADADTPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVDAQGEI--LKK 123
             GAP ++  +AD         +K     TR  +A  ++VL   + G   A   +  L +
Sbjct: 74  VRGAPADVFASADQTAMDKAVAEKAVDPATRKNFAANQIVLIVTQ-GSRLAPTSLADLTQ 132

Query: 124 GAFEHLSLANPKLAPYGLAGVQTMQKLGLEETLRPKIVQAENINQAYQFIASGNALLGFV 183
             ++ ++L NP   P+G      +++ GL   ++ K V AEN+  +  ++A G A  GFV
Sbjct: 133 PDYKRIALGNPASVPFGRYTRTALEQAGLWSQVQAKGVMAENVRTSLDYVARGEADAGFV 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,629
Number of extensions: 28394
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)