BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2332.p (250 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 486 e-138 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 138 4e-34 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 89 5e-19 gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 87 2e-18 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 71 7e-14 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 486 bits (1250), Expect = e-138, Method: Compositional matrix adjust. Identities = 249/250 (99%), Positives = 250/250 (100%) Query: 1 MWLTAEDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPA 60 MWLTAEDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPA Sbjct: 1 MWLTAEDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPA 60 Query: 61 VLGFYLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGE 120 VLGFYLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEA+GE Sbjct: 61 VLGFYLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAVGE 120 Query: 121 RPMEVAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRV 180 RPMEVAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRV Sbjct: 121 RPMEVAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRV 180 Query: 181 LSMQIYDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGRAPQEATA 240 LSMQIYDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGRAPQEATA Sbjct: 181 LSMQIYDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGRAPQEATA 240 Query: 241 QSGDATRRTT 250 QSGDATRRTT Sbjct: 241 QSGDATRRTT 250 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 138 bits (348), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 134/218 (61%), Gaps = 4/218 (1%) Query: 8 WSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLL 67 W+ + L+L +A + T+L L+LG A+ L+R RS R + +V+ LPLVLPP VLG+YLL Sbjct: 5 WTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLL 64 Query: 68 VLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAA 127 VL G +G +G + +G+ L+ F++ G VLAS + + P V++ + AFE++ + + A Sbjct: 65 VLFGRRGALGAWLERMGIELV-FTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAAR 123 Query: 128 TLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYD 187 L S FF V++PLA G + +L FA +GEFG LM+ GN+PG+T+ LS+ IY+ Sbjct: 124 VLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYE 183 Query: 188 HVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTR 225 V+A + A L +++ S ++++M GR R Sbjct: 184 AVQAGDDGSATLL---VVITSITCIVLLMVAGRLTPDR 218 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 7/233 (3%) Query: 5 AEDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGF 64 A+ WSA++LTL A+I L L+ G AW +A+ ++ + ++ LP + P + G Sbjct: 73 ADAWSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGL 132 Query: 65 YLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPME 124 ++L G QG +G + + +L F+ G+VLA++ + PFV + L ++ G E Sbjct: 133 IYVLLFGLQGYLGPWLREHDIKIL-FAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEE 191 Query: 125 VAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQ 184 A L AS F+ V +P G L +L A +GEFG V ++ G+I G+T + +Q Sbjct: 192 AALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQ 251 Query: 185 IYDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGRAPQE 237 + F + GA V S L L ++ L + + A ++ Sbjct: 252 VEILYNEF------NITGAFAVASLLAFLALVTLAIKSVIEWRLHQQHSASEQ 298 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 9 SAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLV 68 ++ RL+ + I L ++ G +AW L R R + + A+V LP LP AV G L Sbjct: 75 ASYRLSFGASLIGAFLNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTT 134 Query: 69 LMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAAT 128 L G +G+L LG+ + F+ G+++A +PFVV+ +Q E E AA+ Sbjct: 135 LYSQNGWLGKLLAPLGIKV-AFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAAS 193 Query: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDH 188 L AS F V P P LT L FA GE+G V+ I GN+P + + + I Sbjct: 194 LGASRWQTFTRVIFPTVLPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTK 253 Query: 189 VEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGR 233 +E ++YA A +A ML+ SF++LL + L + R G+S R Sbjct: 254 LEQYDYAGATAIAMVMLLVSFVLLLTINLLQAWTRKR---GQSER 295 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 7/212 (3%) Query: 14 TLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVLMGPQ 73 TL+L++ VT L + + +L R R + + A++ PL P V+GF +++L G Q Sbjct: 79 TLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLAGRQ 138 Query: 74 GPVGQLTQAL-GLGLL-PFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAATLRA 131 G +G LT L G L+ +S GL L L +S+P V+ + A E + E A +L A Sbjct: 139 GLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGA 198 Query: 132 SPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDHVEA 191 P V +P P +++ + FA +VG FG + NI VL M IY+ Sbjct: 199 RPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTG 254 Query: 192 F-EYAQAHRLAGAMLVFSFLVLLVMMRLGRAG 222 + +A A L+ + V ++ VL + L +G Sbjct: 255 YANFATAASLSIVLGVITWAVLALARSLTGSG 286 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 558,698 Number of extensions: 18451 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 10 Length of query: 250 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 167 Effective length of database: 1,226,865 Effective search space: 204886455 Effective search space used: 204886455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)