BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2331.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312149|ref|YP_003776241.1| molybdate ABC transporter ATPas... 728 0.0 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 145 3e-36 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 132 4e-32 gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transport... 132 4e-32 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 128 7e-31 >gi|300312149|ref|YP_003776241.1| molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/372 (98%), Positives = 368/372 (98%) Query: 1 MKQAMVGPSIAQPGIIARMAYGYGGAGEFQLDLDLKLPGQGVSALSGPSGCGKTTFLRCM 60 MKQAMVGPSIAQPGIIA+MAYGYGGAGEFQLDLDL LPGQGVSALSGPSGCGKTTFLRCM Sbjct: 1 MKQAMVGPSIAQPGIIAKMAYGYGGAGEFQLDLDLTLPGQGVSALSGPSGCGKTTFLRCM 60 Query: 61 AGLLRPSRGYLEVNGEVWQDSQRQYFLPTHRRALGYVFQEASLLPHLSVSRNLDYGARRS 120 AGLLRPSRGYLEVNGEVWQDSQRQYFLPTHRRALGYVFQEASLLPHLSVSRNLDYGARRS Sbjct: 61 AGLLRPSRGYLEVNGEVWQDSQRQYFLPTHRRALGYVFQEASLLPHLSVSRNLDYGARRS 120 Query: 121 GAVSSAASRQKIIDLLGIAALLQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALD 180 GAVSSAASRQKIIDLLGIAALLQSMPSALSGGERQRVA+ARALFTAPRLLLMDEPMAALD Sbjct: 121 GAVSSAASRQKIIDLLGIAALLQSMPSALSGGERQRVAIARALFTAPRLLLMDEPMAALD 180 Query: 181 NERKRDILPYLERLRDELAIPILYISHHPEEIARLADTLVLMRQGRCLASGPLTTLLSRL 240 N+RKRDILPYLERLRDELAIPILYISHHPEEIARLADTLVLMRQGRCLASGPLTTLLSRL Sbjct: 181 NDRKRDILPYLERLRDELAIPILYISHHPEEIARLADTLVLMRQGRCLASGPLTTLLSRL 240 Query: 241 DLPLAHAEDAGAVIEAKVAAHDETYHLTRLVLAGGEIFVPRRELPVGQPVRLQIHARDVS 300 DLPLAHAEDAGAVIEAKVAAHDETYHLTRLVLAGGEIFVPRRELPVGQ VRLQIHARDVS Sbjct: 241 DLPLAHAEDAGAVIEAKVAAHDETYHLTRLVLAGGEIFVPRRELPVGQSVRLQIHARDVS 300 Query: 301 LALSPSHDSSILNRLSATVLKLAPAQHPAHVLVVLDAGGEQLLARITRRSCDQLALVPGQ 360 LALSPSHDSSILNRLSATVLKLAPAQHPAHVL VLDAGGEQLLARITRRSCDQLALV GQ Sbjct: 301 LALSPSHDSSILNRLSATVLKLAPAQHPAHVLAVLDAGGEQLLARITRRSCDQLALVAGQ 360 Query: 361 PVWAQIKSVALL 372 PVWAQIKSVALL Sbjct: 361 PVWAQIKSVALL 372 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 12/202 (5%) Query: 32 DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHR 91 D+ L P ++AL GPSGCGKTT LR +AGL P G + ++GE D+ ++ Sbjct: 20 DVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGE---DASARH---VRE 73 Query: 92 RALGYVFQEASLLPHLSVSRNLDYGAR---RSGAVSSAASRQKI---IDLLGIAALLQSM 145 R +G+VFQ +L H++V N+ +G R RS S A R+K+ ++L+ + L Sbjct: 74 RQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLELVQLDWLADRY 133 Query: 146 PSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILYI 205 P LSGG+RQR+A+ARAL PR+LL+DEP ALD + ++++ +L RL DEL + +++ Sbjct: 134 PPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFV 193 Query: 206 SHHPEEIARLADTLVLMRQGRC 227 +H EE +AD +VLM +G+ Sbjct: 194 THDQEEALEVADQVVLMNKGQV 215 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 73/198 (36%), Positives = 123/198 (62%), Gaps = 10/198 (5%) Query: 32 DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNG-EVWQDSQRQYFLPTH 90 ++D ++ + L GPSGCGK+T LR +AGL +PS G + + G +V Q LP Sbjct: 21 NIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQ-------LPPA 73 Query: 91 RRALGYVFQEASLLPHLSVSRNLDYGAR-RSGAVSSAASR-QKIIDLLGIAALLQSMPSA 148 +R + VFQ +L PHLSV N+ +G R R + +R +++ D+LG+A LL+ P+ Sbjct: 74 QRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGLAHLLERRPAQ 133 Query: 149 LSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILYISHH 208 LSGG++QRVA+ RA+ + LMDEP++ LD + ++++ + L+ +L + ++Y++H Sbjct: 134 LSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHD 193 Query: 209 PEEIARLADTLVLMRQGR 226 E +AD ++L+R+GR Sbjct: 194 QTEAMSMADQVILLREGR 211 >gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 222 Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 116/205 (56%), Gaps = 11/205 (5%) Query: 29 FQLDLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLP 88 F LDL L Q + L GPSG GK+ L+ +AGL+RP G + +NG +S LP Sbjct: 18 FALDLSLVSASQRI-VLYGPSGAGKSLTLKAIAGLMRPDSGRIRLNGRTLFNSNEGIDLP 76 Query: 89 THRRALGYVFQEASLLPHLSVSRNLDYGA-------RRSGAVSSAASRQKIIDLLGIAAL 141 R + Y+FQ+ +L PHLSV++N+ +G RR + A + +L IA Sbjct: 77 VQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPAVAKWLRAFELDDIA-- 134 Query: 142 LQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIP 201 S P+ +SGG+RQRVA+ARAL P +LL+DEP +ALD + + L L+ +L +P Sbjct: 135 -HSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMRAELAELQAQLQVP 193 Query: 202 ILYISHHPEEIARLADTLVLMRQGR 226 +L I+H P ++ L T+ +R GR Sbjct: 194 MLLITHDPADVEALGQTVFELRDGR 218 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 115/218 (52%), Gaps = 8/218 (3%) Query: 16 IARMAYGYGGAGEFQLDLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNG 75 I ++ Y G + L+L + L GPSGCGK+T LR + GL S G L + G Sbjct: 6 IKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGELAIGG 65 Query: 76 EVWQDSQRQYFLPTHRRALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSA--ASRQKII 133 +V LP R + VFQ +L PH++V +N+ +G + +G S A + Sbjct: 66 QVVN------HLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAA 119 Query: 134 DLLGIAALLQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLER 193 +L I LLQ +P LSGG+RQRVA+ RA+ PRL L DEP++ LD + + + Sbjct: 120 AILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAK 179 Query: 194 LRDELAIPILYISHHPEEIARLADTLVLMRQGRCLASG 231 L +LA I+Y++H E L D +V+M +GR +G Sbjct: 180 LHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAG 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,153,347 Number of extensions: 47937 Number of successful extensions: 567 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 376 Number of HSP's successfully gapped: 139 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)