BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2329.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312147|ref|YP_003776239.1| electron transfer flavoprotein ...   887   0.0  
gi|300311111|ref|YP_003775203.1| electron transfer flavoprotein-...    96   8e-21

>gi|300312147|ref|YP_003776239.1| electron transfer flavoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/432 (98%), Positives = 430/432 (99%)

Query: 1   MTEKFDAIVVGAGPSGNACAYTMAKAGLKVLQIERGEYPGSKNVQGAILYSDALERIIPD 60
           MTEKFDAIVVGAGPSGNACAYTMAKAGLKVLQIERGEYPGSKNVQGAILYSDALERIIPD
Sbjct: 1   MTEKFDAIVVGAGPSGNACAYTMAKAGLKVLQIERGEYPGSKNVQGAILYSDALERIIPD 60

Query: 61  FREDAPLERHIIEQRMWVLDDQSFIGGNYRSEDFNKPPYNRYTIIRAQFDKWFSQKVQEA 120
           FREDAPLERHIIEQRMWVLDDQSFIGG+YRSEDFNKPPYNRYTIIRAQFDKWFSQKVQEA
Sbjct: 61  FREDAPLERHIIEQRMWVLDDQSFIGGHYRSEDFNKPPYNRYTIIRAQFDKWFSQKVQEA 120

Query: 121 GALLICETTVTDLLMDGQRVVGVQTDRVGGSIYADIVVLADGVNSVLARKAGFRPELDPA 180
           GALLICETTVTDLLMDGQRVVGVQTDRVGGSIYADIVVLADGVNSVLARKAGFRPELDPA
Sbjct: 121 GALLICETTVTDLLMDGQRVVGVQTDRVGGSIYADIVVLADGVNSVLARKAGFRPELDPA 180

Query: 181 EVALAVKEIHFMPEETIASRFNVSGDAGVVIEMVGKITKGMMGTGFLYTNRDSVTIGVGC 240
           EVALAVKEIHFMPEETIASRFNVSGDAGVVIEM+GKITKGMMGTGFLYTNRDSVTIGVGC
Sbjct: 181 EVALAVKEIHFMPEETIASRFNVSGDAGVVIEMIGKITKGMMGTGFLYTNRDSVTIGVGC 240

Query: 241 MLSDLKRQKCSPYQLLEDMKAHPAIAPLLEGGEMKEYAAHLIPEGGYHSIPCLYGSGWIV 300
           MLSDLKRQKCSPYQLLEDMKAHPAIAPLLEGGEMKEYAAHLIPEGGYHSIPCLYGSGWIV
Sbjct: 241 MLSDLKRQKCSPYQLLEDMKAHPAIAPLLEGGEMKEYAAHLIPEGGYHSIPCLYGSGWIV 300

Query: 301 VGDSGMFVNAVHREGSNLAMTSGRLAAETVIALRAEGLPMNERNLARYRAALNESFVIKD 360
           VGDSGMFVNAVHREGSNLAMTSGRLAAETVIALRAEGLP+ ERNLARYR ALNESFVIKD
Sbjct: 301 VGDSGMFVNAVHREGSNLAMTSGRLAAETVIALRAEGLPLTERNLARYRTALNESFVIKD 360

Query: 361 MKKYRALPGIFHRNPHLLNTYPELLNQAAHHMLKVDGTDKKSKERDIRRSFTQRRSLFGL 420
           +KKYRALPGIFHRNPHLL+TYPELLNQAAHHMLKVDGTDKKSKERDIRRSFTQRRSLFGL
Sbjct: 361 LKKYRALPGIFHRNPHLLSTYPELLNQAAHHMLKVDGTDKKSKERDIRRSFTQRRSLFGL 420

Query: 421 VGDAYKMWRAFE 432
           VGDAYKMWRAFE
Sbjct: 421 VGDAYKMWRAFE 432


>gi|300311111|ref|YP_003775203.1| electron transfer
           flavoprotein-ubiquinone oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 558

 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 155/365 (42%), Gaps = 43/365 (11%)

Query: 28  LKVLQIERGEYPGSKNVQGAILYSDALERIIPDFRED-APLERHIIEQRMWVLDDQSFIG 86
           + V  +E+G   G+  + GA++   AL  +IPD++E  APL   + E R   L       
Sbjct: 48  VSVCVLEKGSEVGAHILSGAVMDPRALSELIPDWKEQGAPLNTPVTEDRFLFLSASK--- 104

Query: 87  GNYRSEDFNKPP----YNRYTIIRAQFDKWFSQKVQEAGALLICETTVTDLLM--DGQRV 140
             Y++ ++  P     +  Y I  +   +W  Q+ +  G  +       ++L   DG  V
Sbjct: 105 -AYKTPNWLLPTCFQNHGNYVISLSNVTRWLGQQAEALGVEIFPGFPAAEVLYHEDGS-V 162

Query: 141 VGVQTD--------------RVGGSIYADIVVLADGVNSVLARKAGFRPELD----PAEV 182
            GV T               ++G  ++A     A+G    L ++   + +LD    P   
Sbjct: 163 KGVATGNMGINKEGEPGPEFQLGMELHAKYTFFAEGARGHLGKQLISKYQLDAGRDPQTY 222

Query: 183 ALAVKEIHFMPEETIASRFNVSGDAGVVIEMVG-KITKGMMGTGFLY-TNRDSVTIGVGC 240
           A+ +KE+  +  E            G+V+   G  +     G  FLY    + V +G   
Sbjct: 223 AIGIKELWEVKPEV--------HQPGLVVHTAGWPLDNDTYGGSFLYHLENNQVAVGYVV 274

Query: 241 MLSDLKRQKCSPYQLLEDMKAHPAIAPLLEGGEMKEYAAHLIPEGGYHSIPCLYGSGWIV 300
            L+  +    SP++  +  K HP I    EGG+   Y A  I  GG  S+P L   G  +
Sbjct: 275 GLA-YENPYLSPFEEFQRYKTHPEIRKFFEGGKRLSYGARAITAGGVQSLPKLVFPGGAL 333

Query: 301 VGDSGMFVNAVHREGSNLAMTSGRLAAETVIALRAEGLPMNERNLARYRAALNESFVIKD 360
           +G    F+NA   +GS+ A+ SG LAA+   A  A G       L+ Y AA   S++ ++
Sbjct: 334 LGCDAGFLNASRIKGSHAAIKSGMLAADA--AFHALGENRQSDELSAYPAAFEASWLKEE 391

Query: 361 MKKYR 365
           + K R
Sbjct: 392 LHKAR 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,421,320
Number of extensions: 61752
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)