BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2328.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein ...   752   0.0  
gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein ...   137   1e-33

>gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/364 (99%), Positives = 364/364 (100%)

Query: 1   MNQEKPAPERKGGKGKYELDERLKAYQGVWVFIEHERGEVHPVSWELLGEGRKLADQLGV 60
           MNQEKPAPERKGGKGKYELDERLKAYQGVWVFIEHERGEVHPVSWELLGEGRKLADQLGV
Sbjct: 1   MNQEKPAPERKGGKGKYELDERLKAYQGVWVFIEHERGEVHPVSWELLGEGRKLADQLGV 60

Query: 61  SLSGVVLGAPDLATRQFCEQAFHHGADSCYLMADPTLSAYRNQPFTKGLTDLVNRYQPEI 120
           SLSGVVLGAPDLATRQFCEQAFHHGADSCYLMADPTLSAYRNQPFTKGLTDLVNRYQPEI
Sbjct: 61  SLSGVVLGAPDLATRQFCEQAFHHGADSCYLMADPTLSAYRNQPFTKGLTDLVNRYQPEI 120

Query: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180
           LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY
Sbjct: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180

Query: 181 RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQEKPQLPFADI 240
           RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQ+KPQLPFADI
Sbjct: 181 RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQDKPQLPFADI 240

Query: 241 IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA 300
           IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA
Sbjct: 241 IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA 300

Query: 301 AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTEAFRQQLTTM 360
           AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTEAFRQQLTTM
Sbjct: 301 AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTEAFRQQLTTM 360

Query: 361 RMAS 364
           RMAS
Sbjct: 361 RMAS 364


>gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  137 bits (345), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 130/231 (56%), Gaps = 11/231 (4%)

Query: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180
           +L  ATA G+++   VA  L  G  +D T +       +    RP + G+ + T+ +++ 
Sbjct: 87  ILAPATAYGKNILPRVAAKLDVGQISDITKV-----ESADTFERPIYAGNAIATVQSID- 140

Query: 181 RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQEKPQLPFADI 240
             ++ TVR       +P        +E    + +S   + V   +   + ++P+L  A I
Sbjct: 141 PIKVITVRTTGF---DPAAQGGSAAVESIPAVADSGKSSFVGREVA--KSDRPELTAAKI 195

Query: 241 IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA 300
           IV+GGRGM  AE+F+++  LA  L A +GA+R  V A +V  + QVGQ+GK V P+LYIA
Sbjct: 196 IVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIA 255

Query: 301 AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTE 351
            GISGAIQH  GM DS VI+AIN D  APIF  A YG+VG+   ++P L +
Sbjct: 256 VGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDLFEVVPELVK 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,212,926
Number of extensions: 54366
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)