BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2327.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit be...   569   e-163
gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein ...    93   2e-20

>gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit beta
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  569 bits (1466), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MHIVVCIKQVPDSAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVTVLT 60
           MHIVVCIKQVPDSAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVTVLT
Sbjct: 1   MHIVVCIKQVPDSAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVTVLT 60

Query: 61  MGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDLVLAG 120
           MGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDLVLAG
Sbjct: 61  MGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDLVLAG 120

Query: 121 KQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTRLPCL 180
           KQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTRLPCL
Sbjct: 121 KQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTRLPCL 180

Query: 181 ITMLEGSNEMRFATMENMFRAARHPIRTWDRTAAGIEDISKIGLKGSPTVVSKVFAPKPN 240
           ITMLEGSNEMRFATMENMFRAARHPIRTWDRTAAGIEDISKIGLKGSPTVVSKVFAPKPN
Sbjct: 181 ITMLEGSNEMRFATMENMFRAARHPIRTWDRTAAGIEDISKIGLKGSPTVVSKVFAPKPN 240

Query: 241 ARRAEIITAEGDEARDLAVTLVGKLFTQHPKLGEAIARKVA 281
           ARRAEIITAEGDEARDLAVTLVGKLFTQHPKLGEAIARKVA
Sbjct: 241 ARRAEIITAEGDEARDLAVTLVGKLFTQHPKLGEAIARKVA 281


>gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 92.8 bits (229), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 116/221 (52%), Gaps = 13/221 (5%)

Query: 1   MHIVVCIKQVPD-SAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVT-- 57
           M ++V +K+V D + ++RV    + +    V   +NP+D  ++EEA+R+K+  GG+VT  
Sbjct: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKE--GGKVTEV 58

Query: 58  -VLTMGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDL 116
             ++ G  Q +  LR  ++ GAD  IL    A  GAD      A+A  ++ +++ +   L
Sbjct: 59  IAVSAGVTQCQETLRTAMAIGADRGIL----AEVGADVELQPLAVAKILKALAEKEQPQL 114

Query: 117 VLAGKQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTR 176
           ++ GKQ ID D  Q G  +A  L     T+ SK+V  +    ++ + R  +GG++ L   
Sbjct: 115 IILGKQAIDDDCNQTGQMLAALLGWPQATFASKVVLEE---GKVTVTREVDGGLETLALT 171

Query: 177 LPCLITMLEGSNEMRFATMENMFRAARHPIRTWDRTAAGIE 217
           LP +IT     NE R+ T+ N+ +A +  + T      G++
Sbjct: 172 LPAIITTDLRLNEPRYVTLPNIMKAKKKQLDTVKPEELGVD 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 821,718
Number of extensions: 32859
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)