BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2324.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312142|ref|YP_003776234.1| ferredoxin [2Fe-2S]-type protei...   226   3e-61
gi|300312438|ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protei...   145   6e-37
gi|300312167|ref|YP_003776259.1| ferredoxin [2Fe-2S]-type protei...    67   3e-13

>gi|300312142|ref|YP_003776234.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  226 bits (576), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/112 (97%), Positives = 110/112 (98%)

Query: 1   MPHITVRPHPVLCTEGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEGFD 60
           MPHITVRPHPVLC EGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEG+D
Sbjct: 1   MPHITVRPHPVLCAEGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEGYD 60

Query: 61  SLAPASDDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARERD 112
           SLAPA DDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARERD
Sbjct: 61  SLAPAGDDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARERD 112


>gi|300312438|ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  145 bits (367), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 83/111 (74%)

Query: 1   MPHITVRPHPVLCTEGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEGFD 60
           MP I + PHPVLC EGS  DA +G+ LCDALL + I +EHACEKSCAC+TCHV++ EGF+
Sbjct: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60

Query: 61  SLAPASDDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARER 111
           +L   +D EED L  AWGL A SRL+CQVVL + DL +E+P YT+N A E 
Sbjct: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASEN 111


>gi|300312167|ref|YP_003776259.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score = 67.0 bits (162), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 10/111 (9%)

Query: 1   MPHITVRPHPVLCTEGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEGFD 60
           MP +T++P       G + +   G  L  A++K G A+ + C+    C  CH+ V EG  
Sbjct: 1   MPVVTIQPS------GKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRK 54

Query: 61  SLAPASDDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARER 111
           S++  +  E  +L    G+ ++SRLACQV++ ++D+ +EL    +N A  R
Sbjct: 55  SVSRTTPSENAKLDSIVGVGSKSRLACQVIVGEEDVTLEL----LNFASGR 101


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 344,870
Number of extensions: 11922
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)