BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2323.p (642 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 fami... 1266 0.0 gi|300312439|ref|YP_003776531.1| molecular chaperone protein [He... 775 0.0 gi|300309950|ref|YP_003774042.1| molecular chaperone protein [He... 432 e-122 gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like A... 58 2e-09 >gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 family [Herbaspirillum seropedicae SmR1] Length = 642 Score = 1266 bits (3276), Expect = 0.0, Method: Compositional matrix adjust. Identities = 634/642 (98%), Positives = 637/642 (99%) Query: 1 MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL 60 MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL Sbjct: 1 MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL 60 Query: 61 PAHSLQPADRPPTVVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDK 120 PAHSLQPADRPP VVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDK Sbjct: 61 PAHSLQPADRPPAVVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDK 120 Query: 121 PGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDA 180 PGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDA Sbjct: 121 PGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDA 180 Query: 181 ARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATN 240 ARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATN Sbjct: 181 ARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATN 240 Query: 241 GDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAARQAKETLSRETSATIELNL 300 GDGALGGDDFDRCIHDW++DQSPLASA LT+QDTRRLLTAARQAKETLSRETSATIELNL Sbjct: 241 GDGALGGDDFDRCIHDWIVDQSPLASAELTTQDTRRLLTAARQAKETLSRETSATIELNL 300 Query: 301 SSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360 SSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR Sbjct: 301 SSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360 Query: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLV 420 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLV Sbjct: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLV 420 Query: 421 EKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAG 480 EKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAG Sbjct: 421 EKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAG 480 Query: 481 AARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDMK 540 AARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEA GHATDDMK Sbjct: 481 AARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAVGHATDDMK 540 Query: 541 MRTLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALMELIETAREANDDNI 600 MR LREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYAL ELIETAREANDDNI Sbjct: 541 MRMLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALTELIETAREANDDNI 600 Query: 601 AALGRACDALNQATQEFAARRMNASVSLALSGQRLDAIDLAS 642 AALGRACDALNQATQEFAARRMNASVSLALSGQRLDAIDLAS Sbjct: 601 AALGRACDALNQATQEFAARRMNASVSLALSGQRLDAIDLAS 642 >gi|300312439|ref|YP_003776531.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] Length = 621 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/639 (63%), Positives = 492/639 (76%), Gaps = 20/639 (3%) Query: 1 MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL 60 M+LLQI+EPG STAPHQ RLAVGIDLGTTNSLVATV++ +L D+ G+ LLPSVVRYL Sbjct: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL 60 Query: 61 PAHSLQPADRPPTVVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDK 120 P +G+ A+AAQ+ DPRNT+ S+KR MGR DI+ ++ +MPY F D+ Sbjct: 61 PNGHAN--------IGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIA--HAENMPYDFQDQ 110 Query: 121 PGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDA 180 PG+VQI T AG+K+P++VSA IL LRQ AE +LG +L GAVITVPAYFDDAQRQATKDA Sbjct: 111 PGMVQIKTVAGVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDA 170 Query: 181 ARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATN 240 A+LAGLNVLRLLNEPTAAAIAYGLD ++EGVFA+YDLGGGTFDISILKL+RGVFEVLAT Sbjct: 171 AQLAGLNVLRLLNEPTAAAIAYGLDNSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATG 230 Query: 241 GDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAARQAKETLSRETSATIELNL 300 GD ALGGDDFD + W+ ++ L L+ +DTR L+ AR+ KE LS + I+ L Sbjct: 231 GDSALGGDDFDHRLFCWISHEAQLQP--LSDEDTRLLMVKAREVKELLSTKDEVQIDAVL 288 Query: 301 SSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360 SG+ V L++T F I+Q L+A+T+ P RKALRDAGL V ++DGVVLVGG+TRMP +R Sbjct: 289 RSGEEVHLSITAAQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIR 348 Query: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSD-WLLLDVCPLSLGLETMGGL 419 AV +FF PL+++DPD+VVALGAA+QAN+LAGNR D WLLLDV PLSLG+ETMGGL Sbjct: 349 RAVGEFFKTNPLSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGL 408 Query: 420 VEKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVA 479 EK+IPRNSTIP ARAQEFTTFKDGQTAM++HV+QGERELVADCRSLAR ELRGIPPM A Sbjct: 409 AEKVIPRNSTIPCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 468 Query: 480 GAARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDM 539 GAARIRVT+Q+DADGLL+VSARE ++GVEA++TVKPSYGL D IARML E+ A +DM Sbjct: 469 GAARIRVTYQVDADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDM 528 Query: 540 KMRTLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALMELIETAREANDDN 599 + R LRE QV A ++ AT +AL+ D +LLS E RQ + A +E + A + D Sbjct: 529 QRRALREEQVEAERIVLATRSALQADA-ALLSEAE----RQAIEAQVEAVSAAAQGTDH- 582 Query: 600 IAALGRACDALNQATQEFAARRMNASVSLALSGQRLDAI 638 A+ A DAL T+EFAARRM+ SV AL+G++LD + Sbjct: 583 -LAIKAAVDALAHGTEEFAARRMDRSVHAALAGKKLDEV 620 >gi|300309950|ref|YP_003774042.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 432 bits (1110), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/620 (40%), Positives = 385/620 (62%), Gaps = 43/620 (6%) Query: 22 VGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYLPAHSLQPADRPPTVVGHAAKA 81 +GIDLGTTNS VA ++ Q +++ + G PS++ Y + +VG AK Sbjct: 5 IGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEI--------LVGAPAKR 56 Query: 82 AQSDDPRNTLSSIKRLMGRDRADISAGNSAD-MPYAFIDKPGLVQIDTAAGIK----TPI 136 +P+NT+ + KRL+GR + + MPY + D G++ P Sbjct: 57 QAVTNPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIV---AADNGDAWIGVRDKKLAPP 113 Query: 137 DVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPT 196 +SA++LR +++ AE LG E++ AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPT Sbjct: 114 QISAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPT 173 Query: 197 AAAIAYGLDQAAEG--VFAIYDLGGGTFDISILKLS----RGVFEVLATNGDGALGGDDF 250 AAA+A+GLD+A +G A+YDLGGGTFD+SI++++ FEVL+TNGD LGG+DF Sbjct: 174 AAALAFGLDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 233 Query: 251 DRCIHDWVLDQSPLASAGLTSQDT---RRLLTAARQAKETLSRETSATIELN-----LSS 302 D+ + D+++D+ + S+D +R+ +A +AK LS +S E+N +++ Sbjct: 234 DQRLIDYIIDEFKKINGLDLSKDAIALQRIKASAERAKIELS--SSQQTEINEPYIAMAN 291 Query: 303 GQAVQLAL--TREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360 G V L L TR S+ + L+A+T+ P R A++DAG+ VS+ID V+LVGG TRMP+V Sbjct: 292 GAPVHLNLKITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVI 351 Query: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLV 420 V +FFG+ P D++PD+ VA+GAA+Q +VL+G+R+ D LLLDV PLSLG+ETMGG++ Sbjct: 352 EKVKEFFGKDPRRDVNPDEAVAVGAAIQGSVLSGDRK--DVLLLDVTPLSLGIETMGGVM 409 Query: 421 EKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAG 480 K+I +N+TIP +Q F+T D Q A+++ V QGERE+ ++L L GIPP G Sbjct: 410 TKMIKKNTTIPTKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRG 469 Query: 481 AARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDMK 540 +I VTF IDA+G+L V A++++TG E +T+K + GL++ I +M+ +A +A +D + Sbjct: 470 TPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKR 529 Query: 541 MRTLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALMELIETAREANDDNI 600 ++ L E + + +T AL G L +A + + A ++ +E A + +D Sbjct: 530 LKELAETRNQGDALVHSTKKALGEYGDKL-----EAGEKDVIEAAIKNLEEALKGDDK-- 582 Query: 601 AALGRACDALNQATQEFAAR 620 AA+ +AL+ A Q+ + Sbjct: 583 AAIDAKTEALSTAAQKLGEK 602 >gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like ATPase [Herbaspirillum seropedicae SmR1] Length = 347 Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 15/231 (6%) Query: 162 VITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGT 221 +I VP +R+A +++A AG + + L+ EP AAAI GL + + D+GGGT Sbjct: 112 IICVPCGSTQVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGT 171 Query: 222 FDISILKLSRGVFEVLATNGDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAA 281 ++ I+ L V++ G +GGD FD I +++ + T++ ++ + +A Sbjct: 172 TEVGIISLGGMVYK-----GSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSA 226 Query: 282 RQAKETLSRETSATIELNLSSGQAVQLAL-TREVFASISQGLLARTLLPTRKALR----D 336 E E NLS G + + E+ +++ L + + AL + Sbjct: 227 FPGSEVKEMEVKGR---NLSEGIPRSFTISSNEILEALTD-PLNNIVSAVKNALEQTPPE 282 Query: 337 AGLGVSEIDGVVLVGGSTRMPQVRAAVADFFGQPPLTDLDPDQVVALGAAM 387 G ++E G++L GG + + + + G P + DP V G+ M Sbjct: 283 LGADIAE-KGMMLTGGGALLRDLDRLLMEETGLPVIVAEDPLTCVVRGSGM 332 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,955,550 Number of extensions: 85725 Number of successful extensions: 403 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 390 Number of HSP's successfully gapped: 5 Length of query: 642 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 551 Effective length of database: 1,188,985 Effective search space: 655130735 Effective search space used: 655130735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)