BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2322.p (106 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312140|ref|YP_003776232.1| transcription regulator protein... 221 1e-59 gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142... 154 1e-39 gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831... 74 3e-15 gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845... 71 2e-14 gi|300312176|ref|YP_003776268.1| Rhizobium etli IscN protein [He... 54 2e-09 >gi|300312140|ref|YP_003776232.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 106 Score = 221 bits (562), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 106/106 (100%), Positives = 106/106 (100%) Query: 1 MSITLTENAARRVHAFLAKRSAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60 MSITLTENAARRVHAFLAKRSAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT Sbjct: 1 MSITLTENAARRVHAFLAKRSAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60 Query: 61 VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106 VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV Sbjct: 61 VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106 >gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142 [Herbaspirillum seropedicae SmR1] Length = 107 Score = 154 bits (390), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 68/107 (63%), Positives = 84/107 (78%), Gaps = 1/107 (0%) Query: 1 MSITLTENAARRVHAFLAKR-SAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGV 59 M+ITLTE AA+ + ++ +R +GLRL V+T+GCSG+AY LEY D +D FESHGV Sbjct: 1 MAITLTEKAAKHISRYMERRGKGIGLRLGVRTTGCSGLAYKLEYVDEQSSEDTVFESHGV 60 Query: 60 TVLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106 V +DPKSLPY+DGTELDF REGLNEGFKF NPN K++CGCGESF + Sbjct: 61 RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFRI 107 >gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831 [Herbaspirillum seropedicae SmR1] Length = 118 Score = 73.6 bits (179), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 ITLTENAARRVHAFLAKR--SAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60 + T++A +V +++ + + LR+ V GCSG Y + D D E +GV+ Sbjct: 13 LIFTDSAVAKVSELISEEGNTELKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNGVS 72 Query: 61 VLIDPKSLPYLDGTELDFVREGLNEGFKF--NNPNAKNQCGCGESFAV 106 +L+D S+ YL+G E+ + EGL EG +F NPNA CGCG SF+V Sbjct: 73 LLVDAMSMQYLNGAEIGY-EEGL-EGSRFIIKNPNATTTCGCGSSFSV 118 >gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845 [Herbaspirillum seropedicae SmR1] Length = 121 Score = 70.9 bits (172), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%) Query: 3 ITLTENAARRVHAFLAKRS--AVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60 I +++AA +V + + + LR+ V+ GCSG Y + ++ D +GV Sbjct: 16 INFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGVQ 75 Query: 61 VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106 +LID S YL G E+D+ + F NPNA CGCG SF+V Sbjct: 76 LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSV 121 >gi|300312176|ref|YP_003776268.1| Rhizobium etli IscN protein [Herbaspirillum seropedicae SmR1] Length = 124 Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%) Query: 1 MSITLT---ENAARRVHAFLAKRSAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESH 57 M+IT+T E RR+ F + G RL V GCSG++ P DV + + Sbjct: 1 MNITITPAAEKFMRRMVRFNGGSAQSGFRLQVSAGGCSGLSSEFSVQAQPTPGDVSLDCN 60 Query: 58 GVTVLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAK-NQCG 99 G+ V + +S L+G +DF G F NPNA CG Sbjct: 61 GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCG 103 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 307,885 Number of extensions: 11194 Number of successful extensions: 33 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 5 Length of query: 106 Length of database: 1,619,870 Length adjustment: 72 Effective length of query: 34 Effective length of database: 1,278,950 Effective search space: 43484300 Effective search space used: 43484300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)