BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2318.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312557|ref|YP_003776649.1| hydroxy-atrazine ethyl amino hy...   103   3e-23

>gi|300312557|ref|YP_003776649.1| hydroxy-atrazine ethyl amino
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 189/434 (43%), Gaps = 34/434 (7%)

Query: 68  IFRNGYIL-SMDPAIGEFATGDVHVKDGVILSVGRS--ISSQTAEIIDATDCIVMPGFID 124
           + RN  IL +M+ +  E   G +++++ VI  VG++  +     EIIDA   IV+PG I+
Sbjct: 11  LIRNARILVTMNESREEIPDGALYIRNNVIEQVGQTADLPQDADEIIDARHHIVLPGLIN 70

Query: 125 GHWHMMNSLWRGLVNDKPGYTYFEIYGRLGPAY---TPQDSVAGVRLALAEAINGGITTV 181
            H HM  SL R + + + G   F    +L P +   TP+        A+AE I  G TT 
Sbjct: 71  THHHMYQSLTRAIPSAQNG-ELFNWLTKLYPIWAGLTPEMIQVSTLTAMAELILSGCTTS 129

Query: 182 HNWANNVRSPAHADAELAAHVASGVRFRWSYGAPFGLPS---IPWDDVVRVQKQWFAAGD 238
            +      +    D  L A    G+RF  + GA     S   +P D VV+ +        
Sbjct: 130 SDHLYIYPNQTRLDDSLEAAARIGMRFHGARGAMSVGQSKGGLPPDRVVQDEAAILKDTQ 189

Query: 239 RMM-TYGIASTAAG----VGPQTITGVAAEMVK-----ARKLGLPISIHELATGPDSPDS 288
           R++ TY      A     V P +   V+ E+++     AR  G+ +  H      D   S
Sbjct: 190 RLIETYHDHQRHAMQRIVVAPCSPFSVSRELMREAADLARHYGVSLHTHLAENVNDIAYS 249

Query: 289 --------VRFLIDAKLLGPDVQLLHGNGIEPY-FGQIVEAGTTVALSPTIDPMTLPLVP 339
                     +  D   +G DV   H   ++ +        GT VA  P  +      + 
Sbjct: 250 REKFNMSPAEYAEDCGWVGHDVWHAHCVQLDAHGIDLFARTGTGVAHCPCSNMRLASGIA 309

Query: 340 PVPGAMSAGIKLSFSVD-TSGQAAADMFTNMRVEWAASHMRANGSNLPTARELLQIATLG 398
           P+   + AG+ +   VD ++   +A M   +R       +   G +  TAR+ L++ATLG
Sbjct: 310 PIRKMLDAGVPVGLGVDGSASNDSAHMLGEVRQAMLLQRV-GFGPDAMTARQALEVATLG 368

Query: 399 GAVAHGLQDVTGSLTPGKRGDLIMVRKSDINMQIAPDIDPAWLLVSSGRPENIDTVLVDG 458
           GA      D+ G+L PG   D++M     I    A   DP   LV    P N+D  +++G
Sbjct: 369 GAKVLNRDDI-GALKPGMSADVVMFDTRQIAFAGALH-DPVAALVFC-TPANVDCSIING 425

Query: 459 RILKRKGTLTTVNV 472
           R++ R+G LT++ +
Sbjct: 426 RVIVREGQLTSIEL 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,590,776
Number of extensions: 67776
Number of successful extensions: 248
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)