BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2317.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-me...   308   3e-85
gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding prote...    78   1e-15

>gi|300310340|ref|YP_003774432.1| FAD-dependent
           2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum
           seropedicae SmR1]
          Length = 376

 Score =  308 bits (790), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 228/374 (60%), Gaps = 1/374 (0%)

Query: 1   MQQKNILIVGGGVGGMSTAIAMAGLGHRVDLIDLDPEWRVYGAGITITGPTLRAFKALGV 60
           +  + ILI+GGG  GMS AI +   G +VDL++LD +WR YGAGI++   TLRA K LGV
Sbjct: 3   LAAQRILIIGGGFSGMSAAIDLRRRGAQVDLVELDAQWRNYGAGISLGPATLRALKQLGV 62

Query: 61  LPDIEAQAYTGTGIQVCSSEGARLAVLPTPVRLEDGIPGCGGIMRPVLHKILSDKVLAAG 120
           L     +   G G+++C   G ++A LPTP      +PG G I+RPVL +IL+D   AAG
Sbjct: 63  LEAFLREGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGGAILRPVLARILADATRAAG 122

Query: 121 VNVRLGLSVDKLEQTPDQVDVELTDGSKAAYDLVVGADGLFSRIRGLLFPDAPLPQYTGQ 180
            +VRLG +   + +   +V+V+ TDG    YDLV+GADGL+S++R  LFP AP P+Y+GQ
Sbjct: 123 ADVRLGCTFSAVREVGHKVEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYSGQ 182

Query: 181 SAWRAQLPRPPEIDRRHFFLGGPYKVGLTPVSQDRMYMFLLENSKEKRRIPDDDLPAELA 240
           + WRA LPRP EI     ++G   K G+ PVS+D MY+F+ E       +      + L 
Sbjct: 183 AVWRAVLPRPQEIVTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDPTTFVSHLR 242

Query: 241 RLTRPYGG-IIRDIGQSLSAENTIVHRPLEAFLLPGPWFKGRVLLIGDAAHPTTPQLASG 299
            L   +   +++ I + L     I+ RPLE  LLP PW++GRV+LIGDA H TTP LASG
Sbjct: 243 GLLEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLASG 302

Query: 300 AGLAAEDALVLAEELGKENRIEHALQRYMSRRYERCLLVVKNSMEIGRREQAGRPIAEQT 359
           A +  EDALVLA+EL +   +  AL  +  RR+ERC +VV+NS  +G  E  G    E +
Sbjct: 303 ACIGIEDALVLADELERHGTVPQALAAFEERRWERCRMVVENSARLGEIEVEGGDKDEHS 362

Query: 360 ILVEQSLKTLAEPI 373
            ++  S   L +PI
Sbjct: 363 RIMRASHAALVQPI 376


>gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 24/236 (10%)

Query: 125 LGLSVDKLEQTPDQVDVELTDGSKAAYDLVVGADGLFSRIRGLLFPDAPLPQYTGQSAWR 184
            G  + K+E   D V +   DG+    D+V+GADG+ SRIR  L    P P+Y G  A R
Sbjct: 126 FGKCLTKVEDRGDVVILSFADGTTEEADIVIGADGVNSRIREELLGVEP-PKYAGYLAHR 184

Query: 185 AQLPRPPEIDRRHFFLGGPYKVGLTPVSQDRMYMFLLENSK------------EKRRIPD 232
           A  P  PE+         P+   +   S DR  M     SK            EK  + D
Sbjct: 185 AVFP-TPELKAGML----PFDACVKWWSDDRHMMVYFVTSKANELYYVTGVPVEKWDLND 239

Query: 233 DDLPAELARLTRPYGGIIRDIGQSLSAENTIVHRPL-EAFLLPGPWFKGRVLLIGDAAHP 291
             LP+    +   + G    +   + A   +    L E   LP  W +GR++L+GDA HP
Sbjct: 240 RWLPSSKEEMRETFHGWHPTVQALVDATVEVTKWSLLERDPLP-LWSRGRLVLLGDACHP 298

Query: 292 TTPQLASGAGLAAEDALVLA---EELGKENRIEHALQRYMSRRYERCLLVVKNSME 344
             P +A GA +A ED  +LA   +E+G  N  + A   Y + R  R   V + S +
Sbjct: 299 MKPHMAQGAAMAIEDGAMLARCFKEVGVSNYAD-AFALYEANRAARASKVQRISHD 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,266,989
Number of extensions: 58605
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)