BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2316.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310337|ref|YP_003774429.1| hypothetical protein Hsero_1004...    70   2e-13

>gi|300310337|ref|YP_003774429.1| hypothetical protein Hsero_1004
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 27/310 (8%)

Query: 75  ASWAAVWGKAGDETRAQADLASERGQDKEAAALYMKASGFYFMG-RFPCPNHPDKERCAQ 133
           A++ A W    ++  + A     RG+   A   Y +A+ +     R      P +    +
Sbjct: 48  AAFRATWADMAEKLCSLAAEDEMRGRLLSAGEKYKRAASYLLTCERLQGHGAPGRLELYK 107

Query: 134 AERETYVLAASYWDNPVRRVTIAFDGRSGEGKEVVFLIRRPHGVERP-PVVVMWGGVDAW 192
              E +    +       RV IA++GR   G     L  R   V+ P PV+V   G+D+ 
Sbjct: 108 RFLEVFQRGIALAGENCERVEIAYEGRVISG-----LYTRARNVQGPAPVLVQLNGLDST 162

Query: 193 KE-QMTAACNAFLAA-GVATIAMDNAGTGES-PVKGVQ---DAERQFLPVFEWAAAQEDL 246
           KE +       +LA  GVA++ +D  GTGE+  + G+    DAE     V +W   +ED+
Sbjct: 163 KEMKYLVGLPGWLAERGVASLVIDQPGTGEALRLHGLTARFDAEHWARHVVDWLEQREDV 222

Query: 247 DAAKVGILGRSFGGYWATKLAHLHPERISAAVNWGGGAHYMFQADW--IESSRYPDSYLM 304
           D  ++G  G S GGY+  ++  + P R +  V WG         DW  ++  R       
Sbjct: 223 DPTRIGCEGVSLGGYYCPRVVAMEP-RFACGVVWGA------NHDWRDVQKRRLEKEGDF 275

Query: 305 ELVETRQRMLGATTDQQYIDGFRRLS--LLDQGLLDRPSAPMLLVNGKEDKQCPPADLHL 362
            +    Q +      +  ID F R++  +   G++++   P L+ +G++D Q P    H 
Sbjct: 276 PVPHYWQHVCWVWGAKD-IDDFMRIAEDVHLDGVVEKIRVPFLVTHGEKDSQIPLKWAHR 334

Query: 363 LTEH--GSPK 370
             E    SPK
Sbjct: 335 TYEQLVNSPK 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,447,880
Number of extensions: 65416
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)