BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2313.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone hydro...   120   1e-28
gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone hydr...   111   5e-26

>gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone
           hydrolase/4-carboxymuconolactone decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 116/244 (47%), Gaps = 1/244 (0%)

Query: 14  SNAERHAVVLLHPVCVNRDIWRLQVPVWSQSFRLILVDLPGHGLSKALGGQPTLADFARG 73
             A RH VVL H +  +  +W       +   R+I  D  GHG S+   G  ++AD A  
Sbjct: 70  GKAPRHTVVLSHALGTDLMMWDGLANQLAADCRVIAYDHRGHGSSEKADGLYSMADLADD 129

Query: 74  LALTLDRTGIGQVSLVGVSLGAMVAQAFALQFPERIRKLVLANAGAVTPEPVMQIWGARQ 133
            A  L     G V  VG+S+G MV Q  AL+ P  +R LVLAN  +  P+   + W  R 
Sbjct: 130 AARLLRELDSGPVVWVGLSMGGMVGQELALRHPGLVRALVLANTTSAYPDAAREAWQQRI 189

Query: 134 RSYVELGSEQHVRSTIERWFDQDYRERAPLTVNWVESLVRSTSQEGYFEAVDAIKRLDHA 193
            +    G E    + + R+F + +R     TV      + +T   GY     A+  +D A
Sbjct: 190 ATVRAEGIEVIADAVMGRYFHEGFRSAQAATVARYRQRLVTTDAVGYVGCCHAVGTVDTA 249

Query: 194 SRLREISAPTLVIAGEKDAAVSPEICRKLADAIPAARLTILP-AGHLSNIEAATEFAEVV 252
           +RL  I  PTLVIAGE D      + + L D I  ARL ++  A H+S +E    FAE+V
Sbjct: 250 ARLGSIRVPTLVIAGELDQGTPVAMAQALVDGISGARLAVIAGASHVSAVEQPALFAELV 309

Query: 253 GQFL 256
             F+
Sbjct: 310 CGFI 313


>gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  111 bits (278), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 2/236 (0%)

Query: 21  VVLLHPVCVNRDIWRLQVPVWSQSFRLILVDLPGHGLSKALGGQPTLADFARGLALTLDR 80
           +VL + +  +  +W  Q+P W Q FR++  D  GHG S+   G+ ++A     +   LD 
Sbjct: 24  LVLSNSLGTSLSMWDPQMPQWLQHFRVLRYDTRGHGQSEVTPGECSIAQLGSDVIALLDH 83

Query: 81  TGIGQVSLVGVSLGAMVAQAFALQFPERIRKLVLANAGAVTPEPVMQIWGARQRSYVELG 140
            GI Q    G+S+G       A+  P+RI KL+L N GA       + W +R  +    G
Sbjct: 84  LGIAQAHFCGLSMGGSTFMWLAVHHPQRINKLILCNTGAKI--GTAEAWNSRIETVRREG 141

Query: 141 SEQHVRSTIERWFDQDYRERAPLTVNWVESLVRSTSQEGYFEAVDAIKRLDHASRLREIS 200
                 + + RW   +Y +  P  V  + +++ +T  EGY  A  A++  D    +  I 
Sbjct: 142 LGAIAGAVVSRWLTPEYAQAHPQQVQALTAMLLATPAEGYAAACAAVRDHDLREAIAGIR 201

Query: 201 APTLVIAGEKDAAVSPEICRKLADAIPAARLTILPAGHLSNIEAATEFAEVVGQFL 256
           APTL+IAG  D    P   + +   IP A+     A H+SN + A  F + V QFL
Sbjct: 202 APTLIIAGSGDVPTPPADAQFMRATIPGAQYVEFDAAHISNQQQAAAFTQAVVQFL 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,021
Number of extensions: 33603
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 4
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)