BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2312.p (291 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310271|ref|YP_003774363.1| AraC family transcription regul... 84 1e-17 gi|300310261|ref|YP_003774353.1| nitrilase regulator protein [He... 79 4e-16 >gi|300310271|ref|YP_003774363.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 350 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 11/236 (4%) Query: 56 LVTIQKEGEASVSQGGRHSHLRPGDMVLIDLGSPFRIE-TGHMVTHSTYVDSELLKRVMP 114 Q EG V Q G+ S + PGD ++D P+ ++ G S + E + + Sbjct: 82 FANFQLEGSCVVRQDGQESMVLPGDFSIVDSTRPYFLDYQGDWHVLSFRIPREQVISRLA 141 Query: 115 DADRRTAVRIETACGPGAIF----RAMSDEMFEMATELDENTAARIAQALPYSLAIALSH 170 + TA R++ G G + R++ +M + + + +A + + +L L Sbjct: 142 SPYKATARRVDGKAGMGLVASRFARSLEQVDLDMGSGVQDCLSAALNSIIAIALGATLEA 201 Query: 171 CDKEMMACPSRLQLFHLERIRAFVRDNLHDSSLDAEMISQAVQLSTRHIYQLFTAEQTSL 230 +++ + ++L + ++RD+L + L +M++ ++S R +Y LF S+ Sbjct: 202 QERDRLPVREAIRL----AVETYIRDHLEEPHLGPDMLASRFKVSRRTLYSLFEEAPLSV 257 Query: 231 MKWVWSERLERCREDLVSRQLSNRPIGEIAYGWGFSDVAHFSRAFKEKFNMTPRAY 286 + RL+R DL+S + + +A WGFSD +HFSR FK +F + PR + Sbjct: 258 SSLIRELRLQRSARDLLSP--GHPGVLAVALRWGFSDASHFSRLFKRRFGVCPREF 311 >gi|300310261|ref|YP_003774353.1| nitrilase regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 9/239 (3%) Query: 48 SRADTRRWLVTIQKEGEASVSQGGRHSHLRPGDMVLIDLGSPFRIETGHMVTHSTYVDSE 107 S D WL GEA ++Q GR + L+ GDM L D PF G + T + + Sbjct: 73 SNPDDDLWLA-FMVSGEAYLAQDGRQARLQSGDMALYDGARPFEFALGPEKIYLTRLPRK 131 Query: 108 LLKRVMPDADRRTAVRIETACGPGAI-FRAMSDEMFEMATELDENTAARIAQALPYSLAI 166 L P+A+ TA I+ A PG + R+M +E D +A R + AL LA+ Sbjct: 132 SLLSRCPEAEHLTAQLID-ARRPGVMALRSMLEEAGTCEFN-DAESAVRYSAALLDVLAL 189 Query: 167 ALSHCDKEMMACPSRLQLFHLERIRAFVRDNLHDSSLDAEMISQAVQLSTRHIYQLFTAE 226 +L+ A + L+ +R+ A++R+N D L+ +++ A +S R + + F Sbjct: 190 SLAAPGARTTAA-EKNDLY--KRVLAYLRENYTDPQLNLHVLAAAHHVSERTLTRAFAQH 246 Query: 227 QTSLMKWVWSERLERCREDLVSRQLSNRPIGEIAYGWGFSDVAHFSRAFKEKFNMTPRA 285 + M + RL+ L N + A GFSD++HFSR F+ F TP++ Sbjct: 247 NQTPMDVLRRVRLQASYRALTEGNAGN--VTTAALDAGFSDLSHFSRVFRAAFGCTPQS 303 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 845,434 Number of extensions: 31444 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 2 Length of query: 291 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 207 Effective length of database: 1,222,130 Effective search space: 252980910 Effective search space used: 252980910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)