BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2309.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...   202   1e-53
gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   125   2e-30

>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score =  202 bits (514), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 126/183 (68%), Gaps = 3/183 (1%)

Query: 9   RLTPVDMAAASPEQKRVLEDILKGPRGNLSGPFLSWIHSPDLAQHAQKLGAFCRYHTKLP 68
           RL  +     + EQ  +L+ IL GPR NL+GPF++WIHSP L + AQ+LGAFCRY T LP
Sbjct: 6   RLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYETGLP 65

Query: 69  LHLSELAILCTAAKWRAQAEWQIHYPIGIEAGLDAANIELIRLGRKPEFQAKEEQLIWAL 128
           L LSELAIL TAA W++QAEW IH PI +EAG+     E IR G  P+F  ++E++IW  
Sbjct: 66  LRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERVIWNF 125

Query: 129 IDELYETKRISGQLYKQAEQCFGVEVLVNLVGLFGYYALVAMTLNVFAVR---HGDGPLP 185
            +ELY  KR+S + Y  A   FG+ V+VNLVGL GYYALVAMTLN F +R    G+G LP
Sbjct: 126 ANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGEGDLP 185

Query: 186 FEE 188
           F E
Sbjct: 186 FAE 188


>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  125 bits (315), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 94/155 (60%)

Query: 19  SPEQKRVLEDILKGPRGNLSGPFLSWIHSPDLAQHAQKLGAFCRYHTKLPLHLSELAILC 78
           +PEQK+  ++ L   +  + GPF   +HSP +   A+ +G + RYH+ +   LSEL IL 
Sbjct: 34  TPEQKQAADEFLAARKVPVFGPFEPLMHSPQVMTQARAMGDYLRYHSAIGNTLSELVILI 93

Query: 79  TAAKWRAQAEWQIHYPIGIEAGLDAANIELIRLGRKPEFQAKEEQLIWALIDELYETKRI 138
           TA +W    EW +HYPI I+AG+       I  GR+PE  ++EE +++    EL+  KR+
Sbjct: 94  TAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGRRPEGMSEEETIVYDFSIELHRNKRV 153

Query: 139 SGQLYKQAEQCFGVEVLVNLVGLFGYYALVAMTLN 173
           S Q + +AE+ FG + +V+L G+  YY L+AM +N
Sbjct: 154 SDQTFARAEKRFGKKGVVDLTGVNSYYTLLAMQMN 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 651,457
Number of extensions: 26258
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)