BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2304.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311651|ref|YP_003775743.1| rhodanese-related sulfurtransfe...   284   2e-78
gi|300312429|ref|YP_003776521.1| rhodanese-related sulfurtransfe...    93   9e-21

>gi|300311651|ref|YP_003775743.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  284 bits (727), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 155/168 (92%)

Query: 1   MSSLSSVAALNPEAPPVITRELPPELAQIRAQAMADGLPYAGGIGPQQAWELVAAGKVVL 60
           MSSLSSVA L+  AP    RELPPELAQIRAQA+ADGLPYAGGI P+QAW LV  GKV+L
Sbjct: 1   MSSLSSVATLSAPAPQASQRELPPELAQIRAQAIADGLPYAGGITPKQAWALVQTGKVLL 60

Query: 61  VDVRTAEERKFVGHVPHSLHVAWATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRS 120
           VDVRTAEERKFVGHVP SLHVAWATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRS
Sbjct: 61  VDVRTAEERKFVGHVPDSLHVAWATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRS 120

Query: 121 VAAAEAATKAGLTCIFNVLEGFEGELDASQQRGKADGWRFHGLPWVQD 168
            AAAEAATKAGL+CIFNVLEGFEGELDA+QQRGKADGWRFHGLPWVQD
Sbjct: 121 AAAAEAATKAGLSCIFNVLEGFEGELDAAQQRGKADGWRFHGLPWVQD 168


>gi|300312429|ref|YP_003776521.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score = 93.2 bits (230), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 38  LPYAGGIGPQQAWELVAA-GKVVLVDVRTAEERKFVGHV----PHSLHVAWATGTSLSRN 92
           LPY G + P +A  L+    ++ LVDVRT  ER +VG V       L V W        N
Sbjct: 19  LPYRGAVTPAEALALLEGDSRIKLVDVRTRAERDWVGVVQIAPAQHLAVQWNLYPEGKPN 78

Query: 93  PRFVRELESKLGGKDVPALLLCRSGKRSVAAAEAATKAGLTCIFNVLEGFEGELDASQQR 152
           P+F+ +L       DV  L LCRSG RS  AA+ AT+ G T  F++LEGFEG  DA+  R
Sbjct: 79  PQFLEQLREVTNPDDV-LLFLCRSGVRSKHAAKLATEHGYTHCFDILEGFEGNKDAAGHR 137

Query: 153 GKADGWRFHGLPWV 166
              +GW   GLPWV
Sbjct: 138 KTVEGWCKAGLPWV 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 547,867
Number of extensions: 20699
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)