BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2301.p (393 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbasp... 168 9e-43 gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurizatio... 162 3e-41 gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbasp... 160 2e-40 >gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 421 Score = 168 bits (425), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 125/394 (31%), Positives = 196/394 (49%), Gaps = 27/394 (6%) Query: 7 SLLQRIADGAAQRDAQREQPFDLIQEIKATGFGAGRLDADHGGGGASLVDTLDTAIQLGA 66 L + + AA RD +R+ P+D ++ +G + ++GG G S + + A Sbjct: 44 KLAEDFSREAALRDRERKLPWDELERYVRSGLWGITVPKEYGGAGVSYGTLAEVIATISA 103 Query: 67 ADPNIAHIWRNHHVALERLLNTPLQHPGVQRLRERVRAGDLVGASHTELGQAQIGGNAPL 126 AD +I I +NH A+E L+ + ERV GD G + ELG + Sbjct: 104 ADGSIGQIPQNHFYAVE-LIRVNGSESQKRFFFERVLQGDRFGNALAELGTKT---SHDR 159 Query: 127 TTRLVR--QGDHYVLNGQKFYSTGSLFADWLHVTVSVEDGRRAVVLLPRQREGVQTLDDW 184 TRL R G Y ++G+KFY+TG+L+ADW+ +V +DG + + ++PR G+ +DDW Sbjct: 160 KTRLSRNAHGPGYRIDGRKFYATGALYADWVPTSVIDDDGVQQLAIVPRHAPGLTIIDDW 219 Query: 185 YGMGQRLTGSGTTVFENVLVSADEVV-------LPDQVPIQQAVFGSTIAQLFLTSVIAG 237 G GQR TGSG+ VFENV V AD V+ P Q+ +AQ+ ++ G Sbjct: 220 SGFGQRTTGSGSAVFENVHVPADAVIGFATAFSRPTQI--------GPMAQIQHAAIDLG 271 Query: 238 VVAAVARDGAALLGKRKRNYYYAPTPSAAQDPILLTAQGEREADAFATRAVVLAAAATAD 297 + A D + R R + + A DP+ + G+ A A++ A D Sbjct: 272 IARAAYADLLTFVRTRSRAWVDSGVERAVDDPLTIREVGDLTIQLHAAEALLRRAGRKVD 331 Query: 298 QAYAALKTSAADADARLQDAAAAAAKAKIIVDRIAHHAATALFDIAGASATLTQLNLDRH 357 A +A D D+ A+ A A+A+++ ++ A + LF++AG+ +TL + NLDRH Sbjct: 332 AA-----AAAPDEDSVAA-ASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLAEHNLDRH 385 Query: 358 WRNIRTISTHNPTSHKAYALGNLSVNQVSLPTQG 391 WRN RT + H+P K +A+GN +N P G Sbjct: 386 WRNARTHTLHDPVRWKYHAIGNYVLNGKKPPRHG 419 >gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurization flavin reductase [Herbaspirillum seropedicae SmR1] Length = 419 Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 120/391 (30%), Positives = 189/391 (48%), Gaps = 15/391 (3%) Query: 4 ISPSLLQRIADGAAQRDAQREQPFDLIQEIKATGFGAGRLDADHGGGGASLVDTLDTAIQ 63 ++ +L R+A GA++RD R P + I+ +G A + GG S + Sbjct: 41 VAHALAPRLAQGASERDQLRRWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAI 100 Query: 64 LGAADPNIAHIWRNH--HVALERLLNTPLQHPGVQRLRERVRAGDLVGASHTELGQAQIG 121 + AADP++ I +NH VA R ++ P Q +R G G + +E G + Sbjct: 101 ISAADPSLGQITQNHLGFVAAVRTVSDPEQQ---RRFFADFLRGVRWGNAFSESGSKRA- 156 Query: 122 GNAPLTTRLVRQGDHYVLNGQKFYSTGSLFADWLHVTVSVEDGRRAVVLLPRQREGVQTL 181 A TR V GDH ++ G+KFYSTG+L A ++ + + E+ R V+ R G+ + Sbjct: 157 --ADFETRFVDAGDHVIVTGKKFYSTGALLAHYVPIVANDEENRTWYVVAERNAPGLTVI 214 Query: 182 DDWYGMGQRLTGSGTTVFENVLVSADEVVLPDQVPIQQAVFGSTIAQLFLTSVIAGVVAA 241 DDW GQR T SGT + + V V ++ + ++ + G+ I Q+ +V G+ A Sbjct: 215 DDWSAFGQRTTLSGTVIIDQVKVPKTHLIPAYKGYLEPSADGA-IFQIIQAAVDVGIARA 273 Query: 242 VARDGAALLGKRKRNYYYAPTPSAAQDPILLTAQGEREADAFATRAVVLAAAATADQAYA 301 D + + R + + A +DP + A G+ + A+ A++ A D A A Sbjct: 274 AIADTQDFVRTKSRPWIDSQRDHAWEDPYSIQAIGDLQIRLHASEALLERAGRAIDAAVA 333 Query: 302 ALKTSAADADARLQDAAAAAAKAKIIVDRIAHHAATALFDIAGASATLTQLNLDRHWRNI 361 A DA + + A A+AK++ IA HA LF++AG +TL Q NLDRHWRN Sbjct: 334 -----APDAQS-VAHAQILTAEAKVLSTEIAIHATNKLFELAGTRSTLGQYNLDRHWRNA 387 Query: 362 RTISTHNPTSHKAYALGNLSVNQVSLPTQGF 392 RT + H+P K +GN +N V P + Sbjct: 388 RTHTLHDPVRWKYAIVGNYYLNGVKPPFHAW 418 >gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 411 Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 196/395 (49%), Gaps = 19/395 (4%) Query: 4 ISPSLLQRIADGAAQRDAQREQPFDLIQEIKATGFGAGRLDADHGGGGASLVDTLDTAIQ 63 ++ L A AAQRD +R PF+ I+ +G A + HGG GAS + Sbjct: 29 VAAELAAEFATSAAQRDRERILPFEQIERFSQSGLWAITVPRSHGGIGASWQTVAEVIRL 88 Query: 64 LGAADPNIAHIWRNHHVALERLLNTPLQHPGVQRLRERVRAGDLVGASHTELGQAQIGGN 123 + AADP+I I +NH L + Q QRL A L GA G + G N Sbjct: 89 ISAADPSIGQIPQNHFGNLNLIARLASQEQ--QRL---FFAEVLDGARLGNAGPERNGKN 143 Query: 124 A-PLTTRLVRQ---GD-HYVLNGQKFYSTGSLFADWLHVTVSVEDGRRAVVLLPRQREGV 178 + TR GD Y+LNG +FYSTG+L+A W+ +DG+ VV R GV Sbjct: 144 VLDVRTRATLDRAAGDGSYLLNGTRFYSTGALYAHWIPSRAIDDDGQPLVVYTRRDAPGV 203 Query: 179 QTLDDWYGMGQRLTGSGTTVFENVLVSADEVV-LPDQVPIQQAVFGSTIAQLFLTSVIAG 237 + +DDW GQR T SGT VF+NV V A +V+ L D +QQ ++QL ++ AG Sbjct: 204 RVIDDWSSFGQRTTASGTVVFDNVRVPATQVLALKDA--LQQPNNIGPVSQLIQAAIDAG 261 Query: 238 VVAAVARDGAALLGKRKRNYYYAPTPSAAQDPILLTAQGEREADAFATRAVVLAAAATAD 297 + A +D A + R R Y + A+ DP +L G A A++ AAA D Sbjct: 262 IAHAAVQDTIAFVTTRSRPYVDSGLERASDDPYILRDIGNLSLRLHAADALLEDAAALLD 321 Query: 298 QAYAALKTSAADADARLQDAAAAAAKAKIIVDRIAHHAATALFDIAGASATLTQLNLDRH 357 A L ++ A+AA A+AK++ +A A+ LF+++G++ATL NLDRH Sbjct: 322 SLPAQLSFE------QMAQASAAVAEAKVLSTELALLASEKLFELSGSAATLASHNLDRH 375 Query: 358 WRNIRTISTHNPTSHKAYALGNLSVNQVSLPTQGF 392 WRN R + H+P K +A+GN ++N P + Sbjct: 376 WRNARVHTLHDPVRWKYFAVGNYALNGTPPPRHSW 410 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,086,985 Number of extensions: 44329 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 3 Length of query: 393 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 306 Effective length of database: 1,207,925 Effective search space: 369625050 Effective search space used: 369625050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)