BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2288.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755...   151   9e-38
gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030...   147   2e-36

>gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  151 bits (381), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 164/338 (48%), Gaps = 22/338 (6%)

Query: 26  LLAPVDSEHPAGQSLRGGPVYGAISQARRQDDASLPMGSWQHELKRADWHKVEYLCAQAL 85
           LL P++   PAG+ L       AI++ARR DD +L  G W  ++K ADW  VE  CA+ L
Sbjct: 22  LLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGEWVIDIKEADWPFVEQHCARLL 81

Query: 86  TTQSKDLQLAAWLLEAQINQSGFDGIGPCLHLMQRLCQGFWDGLYPKSDQDELEHRANIF 145
             +SKDL+LA W  EA     G  G+G    L+  L   FWD +YP+S++ + + R    
Sbjct: 82  EGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDRFWDNMYPQSEEGDHDQRVGNL 141

Query: 146 QWVNDKLLPLMRLVPLTATEQPRQYNWADWELAR-RYEQA-KAAQAAAQPQAQRPPDNSD 203
            W+  + + + R + LT   +   Y+  D+E AR R   A + A    QP+        +
Sbjct: 142 TWLLARSVAMSREIALTEG-RGSAYSLIDFEAARTRAANAERIANEGGQPE--------E 192

Query: 204 VASVAQITAALADTATAFLQARRAALDLSLGALEALTQTIDPLFGTEAPGMQALQLSLQQ 263
              +A + AA   ++ AF +A  A     + ALE L +++D   G   PG  A + +L  
Sbjct: 193 GVKLAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNGPGFSAAREALIA 252

Query: 264 IRALFAGELQRRGFGAIPPAIAPAASPEGSAVSDPLHGAPVTSGQPHPPPAAA-----IR 318
           +R   A       F A     +P      ++ +     AP TS +  PP  A      IR
Sbjct: 253 VRETVA------RFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMMQQGPIR 306

Query: 319 DRMEAYARLAETAQFLMQLEPHSPVPYLVKRATEWGQM 356
            R EA A+L   A+F  + EPHSPV +L  +A +WG+M
Sbjct: 307 TRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEM 344


>gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 168/359 (46%), Gaps = 14/359 (3%)

Query: 26  LLAPVDSEHPAGQSLRGGPVYGAISQARRQDDASLPMGSWQHELKRADWHKVEYLCAQAL 85
           LL P+ +EHP G+ L       AI+QARR DD +L  G W  ++K ADW  VE  CAQ +
Sbjct: 22  LLKPISNEHPGGEDLSFTTDLDAIAQARRFDDPTLDQGEWVTDIKEADWSFVEQRCAQLI 81

Query: 86  TTQSKDLQLAAWLLEAQINQSGFDGIGPCLHLMQRLCQGFWDGLYPKSDQDELEHRANIF 145
            T+SKDL+LA W  EA     G  G+G    LM  L   FWD LYP S+  + + R    
Sbjct: 82  ETRSKDLRLAVWYGEAACKTRGLRGLGDGFLLMAGLFDQFWDHLYPLSEDGDHDRRVGNL 141

Query: 146 QWVNDKLLPLMRLVPLTATEQPRQYNWADWELARRYEQAKAAQAAAQPQAQRPPDNSDVA 205
            W+  + + +   +PLT   +   ++  D+  AR     +AA A         P+     
Sbjct: 142 TWLLSRSVQMSHEIPLTEG-RGSAFSLFDFNSAR----TRAANAERIVNEGGLPEEG--V 194

Query: 206 SVAQITAALADTATAFLQARRAALDLSLGALEALTQTIDPLFGTEAPGMQALQLSLQQIR 265
            +A + +A   ++ AF +A           LE L   +D   G + PG  A + + + + 
Sbjct: 195 KLAVMESARKRSSHAFYEAMLEDAQYCRHCLEQLENIVDHRLGVDGPGFSAAREATKLVH 254

Query: 266 ALFAGELQRRGFGAIPPAIAPAASPEGSAVSDPLHGAPVTSGQP--HPPPAAAIRDRMEA 323
                     G  +   A +     + +AV+  L G+  ++     H  P   IR R EA
Sbjct: 255 DTIVRFAAETGLRSAVSAESILIDGDDAAVAAQLTGSGGSASAVLQHQGP---IRTRAEA 311

Query: 324 YARLAETAQFLMQLEPHSPVPYLVKRATEWGQMNTVDLYQELFLRLGGQL-NIFEMLGL 381
             +L   A+F  + EPHSPV +L  +A +WG+M  +  +    ++ G  L ++ E+LGL
Sbjct: 312 IGQLRAVAEFFRRSEPHSPVAHLADKAAQWGEM-PLHAWLRTVIKDGAALSHVEELLGL 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,374
Number of extensions: 41998
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)