BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2285.p
         (486 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313327|ref|YP_003777419.1| hypothetical protein Hsero_4040...    58   1e-09
gi|300310073|ref|YP_003774165.1| hypothetical protein Hsero_0738...    57   3e-09

>gi|300313327|ref|YP_003777419.1| hypothetical protein Hsero_4040
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 30/308 (9%)

Query: 20  DAVQWSEGMLLGPQHMQQNDIYWQEHLRHRLACIAPHFWGVRHLAV---QLVRDTIVVSE 76
           + V W EG+ L PQH Q+ D Y +  L      + P  WG+  L V    L  +T+ + E
Sbjct: 5   NKVLWGEGLFLRPQHFQRQDHYHEARLHQTALTLNPFCWGISSLKVDHDSLNNNTLRILE 64

Query: 77  LECVLPNGVTLCHP-GNFIRQPDPLLQLDVS----ACRAGEPPMRLWLMVPERSQAAARQ 131
           L  +  +G     P G+ +  P  L ++ +S       A  P ++ +      + A+   
Sbjct: 65  LSAIFQDGEIYKAPDGDDLPDPIELTEIPLSQQSVTFYAALPVLKSF----GSNFASGVA 120

Query: 132 TDPGRRYDSQVGLMTADENTGDGDIPVGRLQLRYELVLSRTNPAPGQGACPLLEVTRDAQ 191
                RY  Q  + T D  T      +  L+    L  S + P       P++ + R + 
Sbjct: 121 NHQSSRY-IQHNIETPDLFTDAAKAELSYLKKAVRLA-SESEPRDSLVCIPIVRLRRSSS 178

Query: 192 GLLRID-DYLPPMTCLSASSHLGTASLLSQLNARHERWWSQAQQLANEASGYGLDGKLNS 250
               +D D++ P    S S H   A LL Q   R  R     Q   +   G+  +   N 
Sbjct: 179 SGFELDPDFVAP----SLSVH--AAPLLFQ---RLRRLMDALQAKVSALYGHHREPSKNV 229

Query: 251 AGLRNQMVARH--LGGALPSLSALLHAAS----HPERLYQCLAEVVGHVAQFATSPLPLK 304
              R+  +     L  A  + + L H  +    HPERLY+ L  + G +  F+ S +   
Sbjct: 230 VEFRSGDITSFWLLHTASTAYARLSHYLNNPLLHPERLYEQLLALAGSLMTFSRSLMLAD 289

Query: 305 MSPYQHDD 312
           + PY+H D
Sbjct: 290 LPPYEHRD 297


>gi|300310073|ref|YP_003774165.1| hypothetical protein Hsero_0738
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 121/305 (39%), Gaps = 24/305 (7%)

Query: 20  DAVQWSEGMLLGPQHMQQNDIYWQEHLRHRLACIAPHFWGVRHLAVQ---LVRDTIVVSE 76
           + V W EG+ L PQH Q+ D+Y +  LR   + + P+ WGV  L V    L  +T+ + E
Sbjct: 5   NKVLWGEGLFLRPQHFQRQDLYHETRLRQTASALHPYCWGVSALQVDRDALNNNTLRILE 64

Query: 77  LECVLPNGVTLCHP-GNFIRQPDPLLQLDVSACRAGEPPMRLWLMVPERSQAAARQTDPG 135
           L  +  +G     P G+ +  PDP   +++      +  +  +  +P      +      
Sbjct: 65  LSLIFQDGEIYKAPDGDDL--PDP---IELGEIALTQQSVTFYAALPAMKSFGSNFAQAA 119

Query: 136 RRYDSQVGLMTADENTGDGDIPVGRLQLRY----ELVLSRTNPAPGQGACPLLEVTRDAQ 191
               S   L+   E T D      + ++ Y      ++S   P       P++ + R   
Sbjct: 120 GGNQSNRYLLDNSE-TPDLFTEAAKAEMSYLKKAVRLVSENEPRDSLVCIPIVRLRRSNS 178

Query: 192 GLLRID-DYLPPMTCLSAS--SHLGTASLLSQLNARHERWWSQAQQLANEASGYGLDGKL 248
               +D +++PP   + A+    L    L+  L A+    +   ++ +          + 
Sbjct: 179 SGFEMDPNFVPPSLSVHAAPLLLLRLRRLMDALQAKVSALYGHHREPSKSVV------EF 232

Query: 249 NSAGLRNQMVARHLGGALPSLSALLHA-ASHPERLYQCLAEVVGHVAQFATSPLPLKMSP 307
            S  + +  +      A  SLS  LH    HPERLY+ L  + G +  F+ S     +  
Sbjct: 233 RSGDITSFWLLHTASTAYASLSHYLHNPLLHPERLYEQLLTLGGSLMTFSRSVALADLPA 292

Query: 308 YQHDD 312
           Y H D
Sbjct: 293 YDHQD 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,487,236
Number of extensions: 61264
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,198,455
Effective search space: 475786635
Effective search space used: 475786635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)