BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2278.p
         (361 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746...    55   6e-09

>gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 32/290 (11%)

Query: 11  TLKELLLAQFSRFDSFQLLRLLQ-WPPSGSPQAAPVR-----LRFRADLSAGFGGHEFSA 64
           ++ E L A   RF  FQ +R+++ W        AP R     LRF    + GF   E  A
Sbjct: 11  SVIERLFAAPHRFQFFQAVRMIELWFKRNG--VAPERAVCDFLRFANRTALGFPASEIEA 68

Query: 65  LRHAPAPAADGADVIDID-------------TPNYC-IASLMGPLPEPFTEWV-RDLKRA 109
           +      ++D   V  +              TP +       G LP  +TE + R     
Sbjct: 69  I--DAVASSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIARHQIEH 126

Query: 110 GSPAMADFLDIFNQRLNELRFQLKTRHTLGLNNQPPVQTEHAAQLAAIMGMGLPHLAVQI 169
                  FLD+F+ R   L +Q  +++ L    +   + +    L ++ G+G   L  ++
Sbjct: 127 RDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFRSLRERL 186

Query: 170 ------PLPQRSWLGLAGLLANCRRSQAALSQTLSVYIGSKVRVEPLIGAWHDIAPQERM 223
                  +   S    A  L++   S   + Q LS Y    + +E  +G W+D+  + + 
Sbjct: 187 LEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWYDVPREHQT 246

Query: 224 ALGRRGNVLGRSTLLGRRAWDQAARVRLVIEGLEYTRFCQLLPPGHAQAA 273
            LG   + LG + + G+R W +  R+RL +  L    F Q LP   A  A
Sbjct: 247 MLGSTNSALG-TAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQA 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,152,252
Number of extensions: 49640
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,212,660
Effective search space: 333481500
Effective search space used: 333481500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)