BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2277.p (608 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033... 219 5e-58 gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745... 207 2e-54 >gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 219 bits (558), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 170/614 (27%), Positives = 289/614 (47%), Gaps = 45/614 (7%) Query: 7 KLKDFYHAELTSLRQEGMAFAQQHPELAHALGLNPRQARDPQVEMLMQSFAFLTGRLQYQ 66 +L +Y EL+ LR+ F++++P++A +L + DP +E ++QS+A L R+ + Sbjct: 3 ELLPYYERELSFLRRYSRDFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVSKR 62 Query: 67 MEIDQAASANALLNSLYPHLAAPVPSMLVAQISVKPKGNDLSHEQVLERGRNISTPAFSA 126 ++ D AL LYPH P PS +A++ L+ ++ RG +ST Sbjct: 63 LDDDYPQFTEALFEVLYPHYLRPFPSCSIARMDCAESAEQLTSATIIPRGTTLSTRPV-- 120 Query: 127 AGRRIDCRFRTAYETPLMPFEVTAIQTQSLKAYPWLCEDGNGDTKNSAVLRVSLRSKG-- 184 + + C+F+T Y+ P+ P +T + P E T ++ L + + + G Sbjct: 121 --KGVVCQFQTVYDVPVAPICLTHAVFSPIIDAP---EAVVLPTSVTSSLSIGIATAGEQ 175 Query: 185 --VANLKGRGRLRFFLNPTEPGAYDLYDLLALHLDSMAITVPQTSQTRRLPVEQFRWLGE 242 +A L LR F++ L D L + + I +P + + LP +G Sbjct: 176 LALAKLD-LVSLRVFIDGEASFCAALRDSLFMRSAAAWIELPGSRRWVPLPAIPLAEVGF 234 Query: 243 ADDEAMLPCNPQTHPGYRLLQEYFSFPEKFMFFEVSQIDFGGVCDQFDLLFLL------- 295 AD++A++ Q+HP YR L EYF+FPEKF FF++ V F+L Sbjct: 235 ADEDALIDFPSQSHPAYRHLTEYFAFPEKFNFFDIDLSAILAVLPADSKSFILHLGLSGL 294 Query: 296 --DSEL-QEYSSYPAQTLRLNCVPLVNLYPQRLDPLKLDHSKYEYHLLGDLENHRYCEIY 352 DS + ++ A L L C P++NL+ QR DP++L H+ Y +L D E+Y Sbjct: 295 RADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGAYYPVLPDGRRAFGYEVY 354 Query: 353 AIETLE--SSSPRSGTRT-IAPYFAIDQSDRLEQQDYFYTTRREASQGVDIAGSEIFISF 409 +I++++ +P+ + T P++++ E +++ RR+ + G E IS Sbjct: 355 SIDSVQLVRETPQGESITSFRPFYSLRHGQSPESDGHYWAMRRDELIALKSPGYETEISI 414 Query: 410 LDQQFNTTQLVDEVIGGRALCTNRRLPEQLDCGAP---LYLEGPGAVSAITVLSKPS-PH 465 +D F+ +++ + + CTNR LP L G P L LEG G + +L KP+ P Sbjct: 415 VDIDFDPSKIETDTLSIELTCTNRDLPALLAYGLPGGDLSLEGGGVIRTAALLRKPTLPS 474 Query: 466 QNPPIIGTRPWALVSQLSLNHLSLADSPLALGALKDILRLHLGPNAGHGLRQIEGLQGLH 525 + G + W L+SQLSLNHLSL + L A +++L L+ N+ RQI + + Sbjct: 475 RFERGRGAQ-WRLISQLSLNHLSLMR--VGLEAFQEMLTLYDQSNSPISQRQISAIAAID 531 Query: 526 CHSIMRHRHIDGW------RGFVRGHDVRLQIDQHCFEDASAVLFCAVLRHFFRSYATVN 579 HR W VRG +V+L +D+ F + F V+ F Y N Sbjct: 532 ------HRPATAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFMGLYVHAN 585 Query: 580 QLVEVSLEMNNLTG 593 ++++ ++ TG Sbjct: 586 SFSQLTV-ISKRTG 598 >gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/604 (25%), Positives = 284/604 (47%), Gaps = 42/604 (6%) Query: 7 KLKDFYHAELTSLRQEGMAFAQQHPELAHALGLNPRQARDPQVEMLMQSFAFLTGRLQYQ 66 +L +Y EL+ LR+ F++++P++A +L ++ DP +E ++QS+A L R+ + Sbjct: 3 ELLPYYERELSFLRRYSREFSERYPKIAGSLLMSGEVCEDPHIERMIQSYALLNARVSKR 62 Query: 67 MEIDQAASANALLNSLYPHLAAPVPSMLVAQISVKPKGNDLSHEQVLERGRNISTPAFSA 126 ++ D AL LYPH P PS +A++ L+ V+ RG ++T Sbjct: 63 LDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDYAASAAQLTTASVIPRGTALTTRQVKG 122 Query: 127 AGRRIDCRFRTAYETPLMPFEVT------AIQTQSLKAYPWLCEDGNGDTKNSAVLRVSL 180 + C+F+TAY+ + P ++ I+ P ++ +++L Sbjct: 123 ----VACKFQTAYDVTVAPIRLSHATFAPIIEAPEAVTLPTSVSSSLSIVIDTTSEQLTL 178 Query: 181 RSKGVANLKGRGRLRFFLNPTEPGAYDLYDLLALHLDSMAITVPQTSQ---TRRLPVEQF 237 G+++ LR F++ L D L + + + +P + + R++P+ + Sbjct: 179 AQLGLSS------LRVFIDGEASFCAALRDSLFMRSVAAWVELPNSGRWTALRKVPLAE- 231 Query: 238 RWLGEADDEAMLPCNPQTHPGYRLLQEYFSFPEKFMFFEVSQIDFGGVCDQFDLLFLL-- 295 +G A+D+A++ ++HP YRLL EYF FPEKF FF++ + F L Sbjct: 232 --VGFAEDDALIDFPARSHPAYRLLTEYFCFPEKFNFFDLDLAAILALLPTGTRKFTLHL 289 Query: 296 -------DSEL-QEYSSYPAQTLRLNCVPLVNLYPQRLDPLKLDHSKYEYHLLGDLENHR 347 DS + ++ A L L C P++NL+ QR DP++L H+ Y ++ D Sbjct: 290 GLSGLRADSHVARQLGGVSAANLLLGCTPVINLFRQRGDPIRLTHAGASYPVVPDARRAF 349 Query: 348 YCEIYAIETLE--SSSPRSGTRT-IAPYFAIDQSDRLEQQDYFYTTRREASQGVDIAGSE 404 E+Y+I++++ +P+ + T P++++ E++ +++ RR+ + G E Sbjct: 350 GYEVYSIDSVQLVRQTPQGESVTQFRPFYSLRHGQSPEKEGHYWAMRRDELVALKSPGYE 409 Query: 405 IFISFLDQQFNTTQLVDEVIGGRALCTNRRLPEQLDCGAP---LYLEGPGAVSAITVLSK 461 IS +D F+ ++ + + CTNR LP L G P L +EG G V + +L K Sbjct: 410 TEISIVDIDFDPAEVETDTLSIELTCTNRDLPASLTYGLPGGDLQMEGGGLVRSAALLRK 469 Query: 462 PS-PHQNPPIIGTRPWALVSQLSLNHLSLADSPLALGALKDILRLHLGPNAGHGLRQIEG 520 P+ P + G W L+S LSLNHLSL L A +++L L+ N+ RQI Sbjct: 470 PTLPARFERGRGAH-WRLISHLSLNHLSLMRG--GLEAFQEMLTLYDLSNSPISQRQIGA 526 Query: 521 LQGLHCHSIMRHRHIDGWRGFVRGHDVRLQIDQHCFEDASAVLFCAVLRHFFRSYATVNQ 580 + + + + + VRG +V+L +D+ F + F V+ F Y N Sbjct: 527 IVSIDHKASTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFLGLYVHANS 586 Query: 581 LVEV 584 ++ Sbjct: 587 FTQL 590 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,814,202 Number of extensions: 73388 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 2 Length of query: 608 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 517 Effective length of database: 1,188,985 Effective search space: 614705245 Effective search space used: 614705245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)