BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2274.p (869 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036... 516 e-147 gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742... 514 e-146 gi|300310076|ref|YP_003774168.1| hypothetical protein Hsero_0741... 100 5e-22 gi|300313324|ref|YP_003777416.1| hypothetical protein Hsero_4037... 100 5e-22 >gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036 [Herbaspirillum seropedicae SmR1] Length = 497 Score = 516 bits (1329), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/471 (52%), Positives = 325/471 (69%), Gaps = 24/471 (5%) Query: 400 DLMKE--EQQLQGLMAAQKRGSAAVIDELVARIDQLLSIALTAVLHCAGFKRMEATWRGL 457 DL+ E Q ++G + + SA +D +A +D+L+S ++A++H F+++E +W GL Sbjct: 44 DLISELVSQVMEGTVVVSENLSA-TLDARIAELDRLISSQVSAIMHAPEFQKLEGSWTGL 102 Query: 458 AHLVFNTETSTKLKLRVFNATQDELIKDMSKAVEFDQSALFKLIYEAEYGTYGGFPYSLL 517 +LV NT K+++ NAT+ EL+KD + A+EFDQSA+FK +YE E+GT+GG P+ L Sbjct: 103 NYLVRNTTVGENQKIKILNATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGAL 162 Query: 518 IGDYELGADAADIEFLKKMSEVAASAHAPFIAAASTAMFGLSGFDKLDKPRDLAKIFENA 577 +GD+E+ D+ F+++MS +AA++HAPFI AAS +FGL F +L KPRDL+K+F+ Sbjct: 163 LGDFEITRQPEDMYFIEQMSRIAAASHAPFITAASPELFGLESFSELGKPRDLSKVFDTV 222 Query: 578 ELTAWREFREMEDSRYVTLVLPRVLLRLPYGKAEKRNTTPCEGINFEEDVSGANLRPYLN 637 E W+ FRE EDSRYV L LPR L RLP+ ++ T EG NF EDV G Sbjct: 223 EYAKWKSFRESEDSRYVGLTLPRFLGRLPFNP---KDGTTVEGFNFVEDVDGT------- 272 Query: 638 AKGEITGYPKPDNQSFLWGNAAFVLAERITNAFALYNWTAAIRGVEGGGLVENLPLYTYT 697 D+ +LW NAA+ ++T AF + W AAIRGVEGGGLVE+LP +T+ Sbjct: 273 -----------DHSKYLWCNAAYAFGSKLTKAFEDFGWCAAIRGVEGGGLVEDLPTHTFK 321 Query: 698 SDSGSSELFCPIEVSITDRREKELNDLGFISLIHCKGSGHAAFFGGQTTNLPKKYFSDSA 757 +D G L CP E++ITDRREKEL+DLGFISL+HCK + +AAFFG Q+ PKKY SD+A Sbjct: 322 TDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYAAFFGAQSAQKPKKYNSDAA 381 Query: 758 NANAKISSMLPYILAASRFAHYIKVIMRSKIGSFMTRENVESFLNNWITNYVLLDDNAAQ 817 NANA +SS L YI A SR AHY+K +MR KIGSF NVE FLN WI YVLLDDNA Q Sbjct: 382 NANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVEDFLNRWIAQYVLLDDNATQ 441 Query: 818 NAKAAFPLREASVVVTDVPGQPGAYRATVFLKPHFQLEELTTSIRLVADLP 868 AKA FPLREASV V++VPG+PG YRA FL+PHFQL+EL+ S+RLVA+LP Sbjct: 442 EAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELSVSLRLVAELP 492 >gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742 [Herbaspirillum seropedicae SmR1] Length = 495 Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust. Identities = 244/471 (51%), Positives = 326/471 (69%), Gaps = 24/471 (5%) Query: 400 DLMKE--EQQLQGLMAAQKRGSAAVIDELVARIDQLLSIALTAVLHCAGFKRMEATWRGL 457 DL+ E Q ++G + SA +D +A +D+L+S ++A++H F+++E +W GL Sbjct: 42 DLITELVNQVMEGTVVVSSNLSA-TLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGL 100 Query: 458 AHLVFNTETSTKLKLRVFNATQDELIKDMSKAVEFDQSALFKLIYEAEYGTYGGFPYSLL 517 +LV NT K+++ NAT+ EL+KD + A+EFDQSA+FK +YE E+GT+GG P+ +L Sbjct: 101 NYLVRNTTVGENQKIKILNATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVL 160 Query: 518 IGDYELGADAADIEFLKKMSEVAASAHAPFIAAASTAMFGLSGFDKLDKPRDLAKIFENA 577 +GD+E+ D+ F+++MS +AA++HAPF+ AAS +FGL + L KPRDL+K+F+ Sbjct: 161 LGDFEITRQPEDMYFIEQMSRIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTV 220 Query: 578 ELTAWREFREMEDSRYVTLVLPRVLLRLPYGKAEKRNTTPCEGINFEEDVSGANLRPYLN 637 E W+ FRE EDSRYV L LPR L RLP+ ++ T EG NF EDV G+ Sbjct: 221 EYAKWKSFRESEDSRYVGLTLPRFLGRLPFNP---KDGTTVEGFNFVEDVDGS------- 270 Query: 638 AKGEITGYPKPDNQSFLWGNAAFVLAERITNAFALYNWTAAIRGVEGGGLVENLPLYTYT 697 D+ +LW NAA+ ++T AF + W AAIRGVEGGGLVE+LP +T+ Sbjct: 271 -----------DHSKYLWCNAAYAFGTKLTKAFEDFGWCAAIRGVEGGGLVEDLPTHTFK 319 Query: 698 SDSGSSELFCPIEVSITDRREKELNDLGFISLIHCKGSGHAAFFGGQTTNLPKKYFSDSA 757 +D G L CP E++ITDRREKEL+DLGFISL+HCK + +AAFFG Q+ PKKY +DSA Sbjct: 320 TDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYAAFFGAQSAQKPKKYNTDSA 379 Query: 758 NANAKISSMLPYILAASRFAHYIKVIMRSKIGSFMTRENVESFLNNWITNYVLLDDNAAQ 817 NANA +SS L YI A SR AHY+K +MR KIGSF NVE FLN WI+ YVLLDDNA Q Sbjct: 380 NANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVEDFLNRWISQYVLLDDNATQ 439 Query: 818 NAKAAFPLREASVVVTDVPGQPGAYRATVFLKPHFQLEELTTSIRLVADLP 868 AKA FPLREASV V++VPG+PG YRA FL+PHFQL+EL+ S+RLVA+LP Sbjct: 440 EAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELSVSLRLVAELP 490 >gi|300310076|ref|YP_003774168.1| hypothetical protein Hsero_0741 [Herbaspirillum seropedicae SmR1] Length = 166 Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 93/156 (59%), Gaps = 9/156 (5%) Query: 3 ESIQQKLLRVRPPRVKITYDVETGGAMEKQELPFIVGIFADLSGDRDPADTLASRPLKER 62 ESIQ+KL +VRPPRV++TYDVE G A+EK+EL F+ G+ D G+ + + LK+R Sbjct: 5 ESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSE----VPQPRLKDR 60 Query: 63 QMTDIDRDNFNAIMKSIGPRVDLTKVPKDVPAAASLLGTPGDKQIVFESLDDFEPMQIIR 122 + ++D DNF+ +MK+I PR + +VP ++ ++ F S++DF P +++ Sbjct: 61 KFVNVDPDNFDEVMKAIEPRA-VYRVPNELSDKGGEFAV----ELKFRSMEDFRPEAVVQ 115 Query: 123 KLPSLNDLYQSRGLIRSLQAKYEADDETAHHLDALL 158 ++ L L ++R + L+ K +D+ L+ +L Sbjct: 116 QVEPLRKLLEARTKLADLRNKIAGNDKLEDILNDVL 151 >gi|300313324|ref|YP_003777416.1| hypothetical protein Hsero_4037 [Herbaspirillum seropedicae SmR1] Length = 166 Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 3 ESIQQKLLRVRPPRVKITYDVETGGAMEKQELPFIVGIFADLSGDRDPADTLASRPLKER 62 ESIQ+KL +VRPPRV++TYDVE G A+EK+EL F+ G+ D G+ + L LK+R Sbjct: 5 ESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVMGDFGGNSE----LPQPRLKDR 60 Query: 63 QMTDIDRDNFNAIMKSIGPRVDLTKVPKDVPAAASLLGTPGDKQIVFESLDDFEPMQIIR 122 + ++D DNF+ +MK I PR + +VP ++ ++ F S++DF P +++ Sbjct: 61 KFINVDPDNFDEVMKGIEPRA-VYRVPNELSDKGGEFAV----ELKFRSMEDFRPESVVQ 115 Query: 123 KLPSLNDLYQSRGLIRSLQAKYEADDETAHHLDALLQNEDPTTQAS 168 ++ L L ++R + L+ K +++ L+ +L + + + S Sbjct: 116 QVEPLRKLLEARTRLADLRNKIAGNEKLEDILNDVLNSTEKLAELS 161 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,455,880 Number of extensions: 96767 Number of successful extensions: 320 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 4 Length of query: 869 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 775 Effective length of database: 1,174,780 Effective search space: 910454500 Effective search space used: 910454500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)