BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2250.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312128|ref|YP_003776220.1| hypothetical protein Hsero_2819...   385   e-108
gi|300310026|ref|YP_003774118.1| TonB protein [Herbaspirillum se...    58   8e-10

>gi|300312128|ref|YP_003776220.1| hypothetical protein Hsero_2819
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  385 bits (989), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/268 (84%), Positives = 235/268 (87%), Gaps = 3/268 (1%)

Query: 1   MISDLAIMSAPDQMRARTAARKSDVRVSAVTAGVLLLHAIGLVWLCYRPNVTLSAAAVGH 60
           MISDLAIM+ PDQMRAR+ ARKSDV VSAVTAGVLLLH IGLVWLCYRPN+TLSAAA GH
Sbjct: 1   MISDLAIMTPPDQMRARSTARKSDVTVSAVTAGVLLLHVIGLVWLCYRPNITLSAAAAGH 60

Query: 61  GGQSVAVQLVSRASVATPVRPAEAKPLPMPMEKPRQKPPQKLKAPPVLTTQAASTQETQS 120
           GGQSVAVQLVSRA  AT V P EAKPLP PMEKPRQKPPQKLKAPPVLTTQAASTQE QS
Sbjct: 61  GGQSVAVQLVSRAPAATAVHPPEAKPLPTPMEKPRQKPPQKLKAPPVLTTQAASTQEIQS 120

Query: 121 DAPASPPTAAPTAAPAAVSPAVSSAASSAPMPASGPPTAAAAAPGSGEAALALKSINASE 180
           D PASPP A P  + AA S    ++A +    ASGPPT AAAAPGSGEAALA+KSINASE
Sbjct: 121 DTPASPPAAPPAVSSAASSAPTPASAPTP---ASGPPTTAAAAPGSGEAALAIKSINASE 177

Query: 181 MAQLNCHIPAPVYSAKSRRLGQKGMVTLRLMIGVDGRIGQVRVTSSSGFAELDAAAVAAL 240
           MAQLNCHIPAP YSAKSRRLGQ GMVTLRLMIGVDGRIGQVRVTSSSGFAELDAAAVAAL
Sbjct: 178 MAQLNCHIPAPAYSAKSRRLGQTGMVTLRLMIGVDGRIGQVRVTSSSGFAELDAAAVAAL 237

Query: 241 QAGRCSPYRVAGVALEVEAAQRISFADD 268
           QAGRC+PYRVAGVALEVEAAQRISF  D
Sbjct: 238 QAGRCNPYRVAGVALEVEAAQRISFTAD 265


>gi|300310026|ref|YP_003774118.1| TonB protein [Herbaspirillum
           seropedicae SmR1]
          Length = 232

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 189 PAPVYSAKSRRLGQKGMVTLRLMIGVDGRIGQVRVTSSSGFAELDAAAVAALQAGRCSPY 248
           P P Y + SRR+G++G+V  R+ +   GR  +V +T SSG++ LD AA  A+      PY
Sbjct: 153 PNPTYPSVSRRMGEEGVVEFRVTVNTSGRAEKVEITKSSGYSRLDDAARNAIMRAVFKPY 212

Query: 249 RVAGVALEVEAAQRISF 265
              G A+ V     ++F
Sbjct: 213 IENGKAITVSTVGSLAF 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.124    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 555,462
Number of extensions: 18255
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 4
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)