BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2243.p
         (110 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312135|ref|YP_003776227.1| thioredoxin 1 [Herbaspirillum s...   219   3e-59
gi|300310194|ref|YP_003774286.1| thioredoxin 1 [Herbaspirillum s...   113   3e-27

>gi|300312135|ref|YP_003776227.1| thioredoxin 1 [Herbaspirillum
           seropedicae SmR1]
          Length = 110

 Score =  219 bits (558), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/110 (95%), Positives = 107/110 (97%)

Query: 1   MSSNIITVTDASFEVDVLQSSQAVLVDFWAPWCMPCKMLAPLLADLAEEFRDTLRIAKIN 60
           MSSNIITVTDASFE DVLQSSQAVLVDFWAPWCMPCKMLAPLLADLAEEF DTLRIAK+N
Sbjct: 1   MSSNIITVTDASFEADVLQSSQAVLVDFWAPWCMPCKMLAPLLADLAEEFHDTLRIAKVN 60

Query: 61  ADENKLHMEKYSVRGLPSILLFVDGIERARLVGMQSKTRLVTFIEDQLEL 110
           ADENK HMEKYSVRGLPSILLFVDG+ERARLVGMQSKTRLVTFIEDQLEL
Sbjct: 61  ADENKQHMEKYSVRGLPSILLFVDGVERARLVGMQSKTRLVTFIEDQLEL 110


>gi|300310194|ref|YP_003774286.1| thioredoxin 1 [Herbaspirillum
           seropedicae SmR1]
          Length = 108

 Score =  113 bits (283), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 77/108 (71%)

Query: 1   MSSNIITVTDASFEVDVLQSSQAVLVDFWAPWCMPCKMLAPLLADLAEEFRDTLRIAKIN 60
           MS  I  ++DASFE DVL+S + VLVDFWA WC PCK +AP+L ++A+E+   L+IAK++
Sbjct: 1   MSDIIKHISDASFEADVLKSDKPVLVDFWAEWCGPCKAIAPILEEVAKEYEGKLQIAKLD 60

Query: 61  ADENKLHMEKYSVRGLPSILLFVDGIERARLVGMQSKTRLVTFIEDQL 108
            D N+    K+ +RG+P+++LF +G   A+ VG  +K +LV+FI+  +
Sbjct: 61  VDANQAIPAKFGIRGIPTLILFKNGAAAAQKVGALAKGQLVSFIDSNI 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 273,403
Number of extensions: 8914
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 37
Effective length of database: 1,274,215
Effective search space: 47145955
Effective search space used: 47145955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)