BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2242.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas...    67   7e-13
gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas...    57   5e-10

>gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score = 66.6 bits (161), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 8   LAVEDIEGRVFIDCLAGAGTLALGHNHPAVIEAIVPLLHEGAALHTLDLTTPVKDRFMQD 67
           +  +D +G  FID  AG G  ++G  +P V+EAI       + +H++++ +  +      
Sbjct: 57  VTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEAIRK--QSESLMHSMEVNSSKRTELAAK 114

Query: 68  LLEILPPEFARQARIQFCGPTGADAIEAALKLVKSATGGGTVLAFQGAYHGMTQGGAA 125
           + EI+P +  R   I F    G+DA+EAA+K  K  TG   ++AF G YHG+     A
Sbjct: 115 ISEIMP-DGLRGDCITFFTQGGSDALEAAVKFAKRVTGRHQIIAFHGGYHGIWNASNA 171


>gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 57.0 bits (136), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 12  DIEGRVFIDCLAGAGTLALGHNHPAVIEAIVPLLHEGAALHTLDLTTPVKD--RFMQDLL 69
           D+EGR FID  AG   L  GH HP +++A+   + +    HT     P        + + 
Sbjct: 40  DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQMDK--FTHTAYQIVPYASYVELAERIN 97

Query: 70  EILPPEFARQARIQFCGPTGADAIEAALKLVKSATGGGTVLAFQGAYHGMTQGGAA 125
            + P  + ++    F   TGA+A+E A+K+ ++ TG   V+AF G +HG T  G A
Sbjct: 98  RLTPGNYPKKTAF-FS--TGAEAVENAIKIARAHTGRPGVIAFAGGFHGRTMMGMA 150


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 446,879
Number of extensions: 18182
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)