BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2237.p (648 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 531 e-152 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 176 6e-45 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 160 3e-40 gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspir... 143 4e-35 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 142 1e-34 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 531 bits (1369), Expect = e-152, Method: Compositional matrix adjust. Identities = 300/660 (45%), Positives = 427/660 (64%), Gaps = 24/660 (3%) Query: 7 PLIELRDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRP 66 PL++LR LR+ +PAG+E + V+ ++L IHAGE VA+VG+SGSGKSTLM+ILGCLD+P Sbjct: 4 PLLQLRGLRRDFPAGDE--KITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKP 61 Query: 67 NAGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQ 126 +AGSY + G++ G+++A+ELA+LRRE FGF+FQ YHL+ LDA NV++P++YAGL P Q Sbjct: 62 SAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQ 121 Query: 127 RQKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSG 186 R++RA ELLARLGL R HH+PGQLSGGQQQRVSIARAL+NGG +ILADEPTGALDS SG Sbjct: 122 RRQRAGELLARLGLAERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSG 181 Query: 187 AEVVQLLHELAAAGHTVILITHDHAIAAQADRRIEIRDGTVVADSGPVRPPERSPCGSAG 246 EV+++L EL A GHT+I++THD +A+ A R IEI+DG ++AD R E P + Sbjct: 182 QEVIKILKELHAEGHTIIIVTHDMQVASHAQRIIEIKDGVIIADR---RNEETVPALATT 238 Query: 247 QSSDLSLRA-------PW-----ALRETLLDAWRALGVNRFRTLLTLLSIIIGVASVIVM 294 S++ A PW +E L + A+ +R R+ LT+L IIIG+ASV+ + Sbjct: 239 ASNNTGASARQGRQARPWRAWLDRFKEALRMSLLAMNAHRLRSFLTMLGIIIGIASVVSV 298 Query: 295 MAIGLGTQAQVIEKMALFGSNRMYVVPGAEQGRTLGG---VLMPEDVALVASIPNVAIAM 351 +A+G G++ Q++ ++ G+N + + PGA+ G L P D A +A V Sbjct: 299 VALGSGSREQILADISAMGTNTIDIFPGADFGDMKSASIRTLTPADAAALAEQNFVDSVT 358 Query: 352 PFREGNVTLRAGRVDVQSRIWAVTSDAPRVLNWKTVRGEFFSRADETSLAAVAVLGKKVR 411 P + + R G + V + I V RV K +G+ F A V+ Sbjct: 359 PSVATSSSARYGNISVTATINGVGEQYFRVRGLKMAQGKSFDTEGIRRYAQEVVIDANSY 418 Query: 412 QRLFGQ-QQAMGRYLLVNDVPFRVIGELAEKGLVTGDSDDDDVILVPFSSATRRVLGQTE 470 ++LF A+G + + VP R+IG ++ G+++ +V VP+++A RV+GQ Sbjct: 419 KKLFPDGGNALGEVIFLGSVPCRIIGVTQKRENGFGNNNALNV-WVPYTTAMSRVIGQRH 477 Query: 471 LSWISILLDDVSQSEATAQEITRVMQQVRRVKDFQVFNQAALIAAQKETQQTLTLMLGLI 530 LS I++ ++D S A Q I +M R KDF +FN ++ ++ TLTL++ +I Sbjct: 478 LSGITVRVNDQVPSAAAEQGIVELMTLRHRTKDFYLFNTDSIRQTVEKATATLTLLVSMI 537 Query: 531 AAISLVVGGIGVMNIMLMSVAERTREIGIRLAVGARQGDIRRQFLCEAMVVSLVGGGAGA 590 A ISLVVGGIGVMNIML+SV ERTREIG+R+AVGARQ DI +QFL EA++V L GG G Sbjct: 538 ALISLVVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDIMQQFLIEAVLVCLAGGLLGV 597 Query: 591 IIGIAIGVLL--ILAGVHLIFSLGTILTAFASALLTGLAFGFMPASKAARLDPVQALSSE 648 ++ ++ G L ++ +I+S +I++AFA + L G+ FGF+PA AARL+PV AL+ E Sbjct: 598 LLALSFGALFSHFVSSFRMIYSTASIVSAFACSTLIGVVFGFLPARNAARLNPVDALARE 657 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 176 bits (445), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 94/208 (45%), Positives = 140/208 (67%), Gaps = 7/208 (3%) Query: 19 PAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRPNAGSYRIRGQDV 78 PAG + ++ GI T+ AG +A+VG+SGSGKSTL+ +L LD P+ GS R+ G+D+ Sbjct: 30 PAGR----LTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDI 85 Query: 79 GQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQRQKRATELLARL 138 ++ + A LR+ GFVFQ + L+ L+AL+NV +P G + +++ATE+L R+ Sbjct: 86 YALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DARAREKATEMLGRV 143 Query: 139 GLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSGAEVVQLLHELA- 197 GLG RL H P LSGG+QQRV++ARA + ++LADEPTG+LD+ +G V++L+ EL Sbjct: 144 GLGSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNR 203 Query: 198 AAGHTVILITHDHAIAAQADRRIEIRDG 225 G T++L+THD+A+AA+ R I I G Sbjct: 204 ERGSTLVLVTHDNAMAARCQRTITIAAG 231 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 135/214 (63%), Gaps = 3/214 (1%) Query: 12 RDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRPNAGSY 71 R L K + G+ V+V+ + + ++ GE VA+VG+SGSGKSTL+H+LG LD P++G+ Sbjct: 15 RGLGKTFTQGK--YSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTV 72 Query: 72 RIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQRQKRA 131 + G+D + E LR ++ GFV+Q +HL+ ALDNV MP + + Q++A Sbjct: 73 SLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQA 132 Query: 132 TELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSGAEVVQ 191 E+L ++GL +R+ H PG+LSGG++QRV++ARAL+ +LADEPTG LD + + Sbjct: 133 REMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFE 192 Query: 192 LLHELAAA-GHTVILITHDHAIAAQADRRIEIRD 224 L+ EL+ G +++THD +A + R + + + Sbjct: 193 LMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSE 226 >gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspirillum seropedicae SmR1] Length = 230 Score = 143 bits (361), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 8/236 (3%) Query: 8 LIELRDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRPN 67 +IE + K Y V ++ I+L++ GE + L G SG+GKSTL+ ++ ++RP Sbjct: 1 MIEFTRVSKQY-----AREVYALRDITLSVRKGELIFLAGPSGAGKSTLLKMIAAIERPT 55 Query: 68 AGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQMPALYAGLPPQQR 127 AG + G D+G ++A L LRR G +FQ L+ + L NV +P + G Q Sbjct: 56 AGKLAVNGTDIGGLKASGLPYLRR-NLGLIFQQQKLLLDRNLLSNVMLPLIVTGSSRQDA 114 Query: 128 QKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSGA 187 ++RA L ++ L + P +LSGG+QQRV+IARA++N QIILADEPT LD + Sbjct: 115 ERRARAALDKVDLLGKAMCEPMELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANAN 174 Query: 188 EVVQLLHELAAAGHTVILITHDHAIAAQADRRIEIRDGTVVA--DSGPVRPPERSP 241 +V+ L G T ++ THD ADR I + G +V +G P E SP Sbjct: 175 KVLAALKSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGWHNGVANPVEVSP 230 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 10/228 (4%) Query: 8 LIELRDLRKAYPAGEEGAPVEVIKGISLTIHAGEFVALVGSSGSGKSTLMHILGCLDRPN 67 ++E + + K + G+ V V+ GI+LTI GE V L+G SGSGKSTL+ + L+ + Sbjct: 1 MVEFKSVSKRF-----GSNV-VLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEID 54 Query: 68 AGSYRIRGQDVGQMEAEELARLRRETFGFVFQGYHLIRTLDALDNVQM-PALYAGLPPQQ 126 G + G V + R R+ G VFQ ++L L AL+NV P G ++ Sbjct: 55 GGDLLVDGISV--LSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEE 112 Query: 127 RQKRATELLARLGLGRRLHHRPGQLSGGQQQRVSIARALINGGQIILADEPTGALDSKSG 186 A+ELLA++GL R HH P +LSGGQQQRV+IARAL +++L DEPT ALD + Sbjct: 113 ANALASELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELR 172 Query: 187 AEVVQLLHELAAAGHTVILITHDHAIAAQADRR-IEIRDGTVVADSGP 233 EV++++ LA G T+I++TH+ + A + R I + +G + D P Sbjct: 173 QEVLRVMQSLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNP 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,823,583 Number of extensions: 74003 Number of successful extensions: 681 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 506 Number of HSP's successfully gapped: 145 Length of query: 648 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 557 Effective length of database: 1,188,985 Effective search space: 662264645 Effective search space used: 662264645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)