BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2234.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311663|ref|YP_003775755.1| iron reductase [Herbaspirillum ...   126   2e-30

>gi|300311663|ref|YP_003775755.1| iron reductase [Herbaspirillum
           seropedicae SmR1]
          Length = 270

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 120/243 (49%), Gaps = 11/243 (4%)

Query: 18  VIPILTPFFPGPLAPLGEALALSPTAPPGALPVLRLINDAAVLKAALVAHARWLDYDGND 77
           V+PIL P F    A     L    ++   ALP+  L+  AA+  A  +  A W     +D
Sbjct: 27  VLPILAPLFDQRTAAYAARLVCDVSSYAQALPLPALLEGAALDDAVRLHAAHW---RSDD 83

Query: 78  LRAVASAWSMAYLGALLPPYCAAASVLEHVFPAAAGQLSVSLDAHGTPSTFHLHSAGHVL 137
           LRAVASAW + Y  A+L P  AAA+VL H  P AA Q+ V L +HG  +   L  AGH  
Sbjct: 84  LRAVASAWCLDYFAAMLVPAMAAAAVLRHHLPLAAVQVRVVLASHGGMAQVCLPHAGHPW 143

Query: 138 PHGSAWERYRPLLQDHLPMLFAALTACSRIPPKILWGNVARHLHVIFDNAT-QQLPSVTR 196
           P  S  ERY  L+  HL  + AAL    R P  +LWGN  R++H +        LPS   
Sbjct: 144 PQASPPERYEELVWQHLAPVIAALNKRFRTPSAVLWGNAVRYIHAVLQRGVLLALPSQEG 203

Query: 197 IETDRAQLLESADGDHG-PNPLHDRQRCVRLVEDGRIASRVMYRQCCLYVLLPPGLYCQG 255
           +  DR  LL+S     G  NPL+ R    R V    +    ++R CC+Y  LP   YC  
Sbjct: 204 LAEDRRLLLDSPLWPDGRTNPLYHR----RAVPPAGV--DYLHRNCCMYYRLPGEDYCAA 257

Query: 256 CPL 258
           CPL
Sbjct: 258 CPL 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 860,935
Number of extensions: 34141
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)