BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2233.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311664|ref|YP_003775756.1| siderophore (cyclic peptide) AB... 307 1e-84 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 93 5e-20 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 87 5e-18 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 82 1e-16 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 82 2e-16 >gi|300311664|ref|YP_003775756.1| siderophore (cyclic peptide) ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 560 Score = 307 bits (786), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 198/547 (36%), Positives = 298/547 (54%), Gaps = 45/547 (8%) Query: 36 GMATVALLAMVNQVLAATMKVNGE--ALLIFVALCVAALIGRALSHIAMNRVGQDLVAQI 93 G+ ++ ++ + LAAT + A L F +A + +I R+ + AQ Sbjct: 24 GVCSILMVTQITATLAATQAPGWQSTAALHFALTVLALWLAHMTCNILFERLAHGVHAQS 83 Query: 94 RMRLAQKILSAPIDALERYRSYRLIPVLTQDVDMISDMIFVLATTLVSVVTVLGCLAFLA 153 R + +++L A LE+ + + LT+ +S L + + V GC+ ++A Sbjct: 84 RRFICERVLHADYARLEQVGAPAIQAALTEHSTNVSTFFVSFPAILTNAIVVSGCMIYMA 143 Query: 154 WLSLPLLGILVLALVLGGAIQVWAQVKGVAGFWKARDHEEELHKAYRDISQGAKELRMQR 213 LS + VL + LG A A ++ + +A ++ L +R + GAKELR+ Sbjct: 144 TLSAQVFACAVLVIGLGAAGYHLAHLRAIRHLRQASGEQDRLFSHFRSMLDGAKELRLN- 202 Query: 214 GRRSRMFRRRI-EHTIKAIRDVNSRAINIYVLAAAYGSALYFLLIALILG-WAAFHPVDM 271 GR+ R+F R + +I +R S + I+V A ++G+ L + I L+L P Sbjct: 203 GRKRRLFGREVLGQSIDRVRHERSLGMAIFVAATSWGNFLIYAFIGLVLFVLVGDVPDRN 262 Query: 272 AVLSGFVLILLFLKGPVEQIMGVLPEVGRAKVAFQRIAELSASFANPEPHLHLDGSAPPA 331 +L+G+ ++ +++ P+E ++ P AKV+ +RI E+ + N P AP A Sbjct: 263 RILTGYAVLFIYMITPLEILLMNAPRANLAKVSARRIDEVVQALDNGRP------RAPAA 316 Query: 332 TLEEG------------IELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFIVGDNGS 379 L + ++L V + + ++ FT+GP++LA GE++F+VG NGS Sbjct: 317 ALPQQHQPHQPAPELQRLQLSGVLHRYYHEQH-DEFFTMGPIDLAFAPGEVVFLVGGNGS 375 Query: 380 GKTTLIKLLLGLYRPQQGSILLDGKPVT--------DEDR---DDYRQLFTTVFADFHLF 428 GKTTL KLL GLYRP +G ILL+G+PV+ E R + YRQLF TVF+DFHLF Sbjct: 376 GKTTLAKLLAGLYRPGEGHILLNGRPVSWQPDVEGEGEARVPDEQYRQLFATVFSDFHLF 435 Query: 429 DELLPTAG---EARSEQVAQAAAHYLQRLEIAHKVSIKDDAFTTLDLSTGQRKRLALVHA 485 + LL T G +AR ++ L +L + HKV I+D AFTT LS GQRKRLALV A Sbjct: 436 ESLLETGGAELDARGNEL-------LAKLYLHHKVQIRDGAFTTRALSMGQRKRLALVVA 488 Query: 486 YLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHLADRVVRMA 545 LE RP +FDEWAADQDP F+ +FY E+L +LR G V+ ISHDD+YFHLADR+VRM Sbjct: 489 VLEDRPFFIFDEWAADQDPVFKKVFYHEVLGQLRAAGKTVLVISHDDQYFHLADRMVRMD 548 Query: 546 GGQIVED 552 G++V D Sbjct: 549 NGRVVFD 555 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 20/228 (8%) Query: 337 IELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFIVGDNGSGKTTLIKLLLGLYRPQQ 396 ++LR +R FP+ G E+ L +NL + GEL+ IVG +GSGK+TL+ +L L +P Sbjct: 6 LQLRGLRRDFPA--GDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSA 63 Query: 397 GSILLDGKPVTDEDRDDYRQL----FTTVFADFHLFDELLPTAG-EARSE-------QVA 444 GS L+ G+ D D+ QL F +F +HL +L TA E S Q Sbjct: 64 GSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRR 123 Query: 445 QAAAHYLQRLEIAHKVSIKDDAFTTLDLSTGQRKRLALVHAYLEGRPVLVFDEWAADQDP 504 Q A L RL +A + K LS GQ++R+++ A + G V++ DE D Sbjct: 124 QRAGELLARLGLAERSHHKPG-----QLSGGQQQRVSIARALMNGGDVILADEPTGALD- 177 Query: 505 TFRHLFYTELLPELRELGHLVIAISHDDRYFHLADRVVRMAGGQIVED 552 + ++L EL GH +I ++HD + A R++ + G I+ D Sbjct: 178 SHSGQEVIKILKELHAEGHTIIIVTHDMQVASHAQRIIEIKDGVIIAD 225 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 133/533 (24%), Positives = 236/533 (44%), Gaps = 54/533 (10%) Query: 51 AATMKVNGEALLIFVAL-CVAALIG--RALSHIAMNRVGQDLVAQIRMRLAQKILSAPID 107 AA K L F+AL VA ++G AL ++ +G+ + A +R + +++ + Sbjct: 81 AAGSKSASHINLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPE 140 Query: 108 ALERYRSYRLIPVLTQDVDMISDMIFV-LATTLVSVVTVLGCLAFLAWLSLPLLGILVLA 166 E ++ ++ LT D +I ++ ++ L + + +G ++ L + S L I+++ Sbjct: 141 FFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVM 200 Query: 167 LVLGGAIQVWAQVKGVAGFWKARDHEEELHKAYRDISQGAKEL-----RMQRGRRSRMFR 221 L A+ + G + R D S A E+ +Q + Sbjct: 201 LA---AVVLPIVFYG----RRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEA 253 Query: 222 RRIEHTIK-----AIRDVNSRAI-NIYVLAAAYGSALYFLLIALILGWAAFHPVDMAVLS 275 RR +++ A+ V +R++ + + +G+ ++ L W H V +S Sbjct: 254 RRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVL-------WLGAHAVMEGSMS 306 Query: 276 G-----FVLILLFLKGPVEQIMGVLPEVGRAKVAFQRIAELSASFANPEPHLHLDGSAPP 330 G F+L + G + + V+ + RA A +R+ +L A+ +P + L PP Sbjct: 307 GGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAH-SPVQSVLLPEKLPP 365 Query: 331 ATLE-EGIELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFIVGDNGSGKTTLIKLLL 389 T + ++ V + +PS G P +L L+L ++ GE + IVG +G+GKTTL +LLL Sbjct: 366 RTANGAALTVQGVDFHYPSRPG--HP-SLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLL 422 Query: 390 GLYRPQQGSILLDGKPVTDEDRDDYRQLFTTVFADFHLFDELL--------PTAGEAR-- 439 Y PQQG ILLDG + D R V D +F P A +A Sbjct: 423 RFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVI 482 Query: 440 SEQVAQAAAHYLQRLEIAHKVSIKDDAFTTLDLSTGQRKRLALVHAYLEGRPVLVFDEWA 499 + AA +++RL ++ + + + LS GQR+R+A+ A L+ P+L+ DE Sbjct: 483 AAAQMAAAHEFIERLPGSYACFLGERG---VRLSGGQRQRIAIARALLKNPPLLLLDEAT 539 Query: 500 ADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHLADRVVRMAGGQIVED 552 + D L L E +G + I+H ADR++ + G+IVE Sbjct: 540 SALDAESERLVQGAL--EAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVES 590 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 13/192 (6%) Query: 368 GELLFIVGDNGSGKTTLIKLLLGLYRPQQGSILLDGKPVTDEDRD---DYR-QLFTTVFA 423 GE+LFIVG +GSGKTT + ++ G+ RP G + ++G + + D D+R VF Sbjct: 44 GEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQLADFRLNTIGFVFQ 103 Query: 424 DFHLFDELLPTAGEARSEQVAQAAAHYLQRLEIAHK----VSIKD--DAFTTLDLSTGQR 477 D+HLF L T+ E + + + L A+ V +K D F L LS G++ Sbjct: 104 DYHLFPRL--TSAENVAIPLILKNVDWKSALASANMFLDVVGLKGCGDVFP-LKLSGGEQ 160 Query: 478 KRLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHL 537 +R+A+ A + P+L+ DE A D + L ++ ++ ++HD R Sbjct: 161 QRVAIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKILNPRRCILIVTHDPRISEF 220 Query: 538 ADRVVRMAGGQI 549 ADR+V MA G++ Sbjct: 221 ADRIVHMADGKV 232 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 330 PATLEE-GIELREVRYAFPSATGVEQP----FTLGPLNLALKRGELLFIVGDNGSGKTTL 384 PA L++ +EL + +P G+ QP + ++L L RGE L +VG++G GK+TL Sbjct: 8 PAPLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTL 67 Query: 385 IKLLLGLYRPQQGSILLDGKPVTDEDRDDYRQLFTTVFADFHLFDELLPTAGEA-----R 439 K+LLGL P G++L++G+ V +R + + +F D + T E + Sbjct: 68 AKMLLGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLK 127 Query: 440 SEQVAQAAAHYLQRLEIAHKVSIKDDAFTTL--DLSTGQRKRLALVHAYLEGRPVLVFDE 497 + AA Q +I V + + LS GQR+R+A+ A + +L+ DE Sbjct: 128 LHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDE 187 Query: 498 WAADQDPTFRHLFYTELLPELRELGHLVIAISHD-DRYFHLADRVVRMAGGQIVE 551 + D + + LL E G + ISHD HL DRV M G IVE Sbjct: 188 PTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVE 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,571,896 Number of extensions: 62423 Number of successful extensions: 526 Number of sequences better than 1.0e-08: 67 Number of HSP's gapped: 482 Number of HSP's successfully gapped: 67 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)