BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2224.p (1511 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311248|ref|YP_003775340.1| malonyl CoA-[acyl-carrier-prote... 106 2e-23 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 99 4e-21 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 80 1e-15 gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetas... 61 5e-10 >gi|300311248|ref|YP_003775340.1| malonyl CoA-[acyl-carrier-protein] transacylase [Herbaspirillum seropedicae SmR1] Length = 310 Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 140/293 (47%), Gaps = 23/293 (7%) Query: 540 FLFPGQGAQHANMGRAAYADHPRVRQVVDHCCTLLQPHLGLDLRELLFPAPGTEAEAGQR 599 F+FPGQG+Q M +AD+ VRQ V LQ DL +L+ P + Sbjct: 6 FVFPGQGSQAIGMLNG-FADNDVVRQTVAEASDALQ----FDLGKLIAEGPKED------ 54 Query: 600 LAQTALTQPALFVVEYALAQWWLEQGLRPDAML-GHSIGEYVAATLAGVFSLEDALTVIA 658 L T TQP + A + WL G + A++ GHS+GEY A AGV + +DA+ ++ Sbjct: 55 LDLTTNTQPVMLTAAVAFYRAWLAAGGKAPALVAGHSLGEYSALVAAGVIAFKDAVPLVR 114 Query: 659 ARGRLLQQT----EAGSMLSVPLSEACLR---EQALAGCDLAAV--NGPELCVLAGSAQA 709 R + +Q+ + G + LS+ +R +A G + AV N P V+AG A Sbjct: 115 FRAQAMQEAVPVGQGGMAAILGLSDEDVRAACAEAAQGDVVEAVNFNAPAQVVIAGHKAA 174 Query: 710 IAQAKATLATRGVE-SRALQVSHAFHSARVEPMLAAFGELLGRVPLQAPQLPFVSNVSGT 768 + +A +G + + L VS FHS+ ++P L V APQ+P ++NV Sbjct: 175 VERACDIAKAKGAKRALPLPVSAPFHSSLLKPASDRLQAYLANVAFSAPQIPLINNVDVA 234 Query: 769 WITEQQARSPAYWVQHVRATVRFADGLALLAGQTARVWLEVGPGDTLTTLTRR 821 + + A A V+ A VR+ + + +A + +E GPG LT LT+R Sbjct: 235 VVNDPAAIKDAL-VRQAAAPVRWVETVQKMAAEGVTHLVECGPGKVLTGLTKR 286 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 98.6 bits (244), Expect = 4e-21, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 10/225 (4%) Query: 168 IAYKLDLKGPAVAVQTACSTSLAAVHLACRGLLNHEADLALAGGVWLNLLQ-GRGYRYQA 226 ++ K LKGP +A+ TAC+T L + A R ++ +AD+ +AGG ++ G G A Sbjct: 150 LSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMYGDADVMVAGGAESSVSPLGIGGFASA 209 Query: 227 GAILS----PDGHCRPFDAQAGGTAIGSGAGLVVLKRLADARADGDTIHAVIRGSAMNND 282 A+ + P RP+D G +G GAG++VL+ A+A G I+A + G M+ D Sbjct: 210 RALSTRNDDPATASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAELLGFGMSGD 269 Query: 283 GADKIGYTAPSIAGQAAVIMAAHAMAEVSPQSIGYVEAHGTATALGDPIEAAALMQAFGS 342 TAP++ G ++ A A V+P + Y+ AHGT+T LGD E+ A+ AFG Sbjct: 270 AYH---MTAPNLDGPRRCVLNALRDAGVNPDEVQYLNAHGTSTPLGDKNESDAIKAAFGD 326 Query: 343 ASGEPFCALGSLKGNIGHLDAAAGVAGLIKTVQAIRQGILPPSLN 387 + + + S K GHL AG + TV A+ + PP++N Sbjct: 327 HAYK--MVVNSTKSMTGHLLGGAGGLETVLTVLAVHNQVSPPTMN 369 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 27/209 (12%) Query: 238 PFDAQAGGTAIGSGAGLVVLKRLADARADGDTIHAVIRGSAMNNDGADKIGYTAPSIAGQ 297 PFD G +G GAG ++L+ L A+A G IHA I G N+DGA T P+ A Sbjct: 227 PFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAH---VTNPNAATM 283 Query: 298 AAVIMAAHAMAEVSPQSIGYVEAHGTATALGDPIEAAALMQAFGSASGEPFCALGSLKGN 357 A I A A + +IGY+ AHGT T GD E A + FG A+ + SLK Sbjct: 284 QAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKAT-----PISSLKSY 338 Query: 358 IGHLDAAAGVAGLIKTVQAIRQGILPPSLNFRQANAQ------ITFSGSPFYVNTVTQPW 411 +GH A G +++ +R G P++N + + +T +G V Sbjct: 339 MGHTLGACGALEAWLSIEMMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMS-- 396 Query: 412 PQQRWPRRAGVSSFGMGGTNVHVVLEQAP 440 ++F GG N ++ ++ P Sbjct: 397 -----------NNFAFGGINTSLIFKRWP 414 >gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetase [Herbaspirillum seropedicae SmR1] Length = 9160 Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1405 YVEPVQELERGVAALWSEFLGITPVGLDDNLFELGGDSLLAIQLLASLRQRYGVDVQPAS 1464 Y P + E G+AA+W+E L + VG DN FELGGDS+L++Q++A ++ G + P Sbjct: 7701 YEAPQGQTEIGLAAIWAEVLRLQRVGRHDNFFELGGDSILSLQIVARAHEQ-GWPLTPRQ 7759 Query: 1465 FFQSPTVRTLACQVEE 1480 FQS TV LA Q ++ Sbjct: 7760 LFQSQTVAELAQQCDQ 7775 Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 13/103 (12%) Query: 1384 PAALAPVAARPVHA-----RPALSAP-------YVEPVQELERGVAALWSEFLGITPVGL 1431 PAAL + A P++ R AL AP Y P LE +AA+W E L VG Sbjct: 6145 PAALVMLPALPLNINGKVDRKALPAPELAARTAYAAPQGALEEQLAAIWREVLKGGAVGR 6204 Query: 1432 DDNLFELGGDSLLAIQLLASLRQRYGVDVQPASFFQSPTVRTL 1474 DDN FELGGDS+L++Q+++ R R G+ + F+ TV L Sbjct: 6205 DDNFFELGGDSILSLQIVSRAR-RAGIAITARQMFERQTVAEL 6246 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,825,087 Number of extensions: 212512 Number of successful extensions: 873 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 871 Number of HSP's successfully gapped: 9 Length of query: 1511 Length of database: 1,619,870 Length adjustment: 98 Effective length of query: 1413 Effective length of database: 1,155,840 Effective search space: 1633201920 Effective search space used: 1633201920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)