BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2222.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311657|ref|YP_003775749.1| clavaminic acid synthetase (CAS...   434   e-123
gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetas...   241   5e-65

>gi|300311657|ref|YP_003775749.1| clavaminic acid synthetase
           (CAS)-like protein [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  434 bits (1116), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 244/315 (77%), Gaps = 1/315 (0%)

Query: 11  RAPAGSELPALITPSAPGQSLLAVLPGLQGQIEKLLAQVGAVLLRGFDVPAVEDFRRFAA 70
           +AP  S LPAL+    PGQ L       +  I+  + QVG VLLRG+ VP V  FR FAA
Sbjct: 27  KAPPASALPALLQADGPGQPLQQAFEHQRDWIDATVQQVGGVLLRGYAVPEVAVFRAFAA 86

Query: 71  GFGHPLLDYEFGSTPRSAIGGGVYTTTEYPAHQSIPLHNEQAYTRIWPMKAWFHCVEPAQ 130
            FGH LL YEF STPRS +  GVYT+TEYPAHQ IPLHNEQAYTR WPMK WFHCV  AQ
Sbjct: 87  AFGHALLSYEFASTPRSNVSSGVYTSTEYPAHQHIPLHNEQAYTREWPMKIWFHCVTAAQ 146

Query: 131 EGGQTPIADSRAIYRRMPLAIRRRFADGILYVRNY-GDFDLPWQKVFNTEQRAEVEAFCR 189
            GG+TPIADSRAIYRRMP AIR RFA G++YVRNY  DFD+PWQ+VFNT+ RA+VEAFCR
Sbjct: 147 AGGETPIADSRAIYRRMPAAIRERFAAGLVYVRNYDSDFDVPWQQVFNTDDRAQVEAFCR 206

Query: 190 KAKIAWEWKSDGQLRTRQLCQAVETHPVTGEMVWFNQAHLFHVSNLQADVRESLEELLDI 249
           +A + WEWK+DG +RT Q CQ VE HP +GEMVWFNQAHLFH SNLQADVRESLE++L +
Sbjct: 207 RAGVQWEWKADGSMRTIQRCQGVERHPRSGEMVWFNQAHLFHPSNLQADVRESLEDMLGV 266

Query: 250 EELPRNTYFADGSSIPDVMLAEVREILDAETVSFLWKKGDVMMLDNMLVAHARAPFKGPR 309
           + LPRN  FADGS IPD ML EVR +LD ETV F W+ GDV+MLDNML AHAR PF+GPR
Sbjct: 267 DNLPRNVLFADGSPIPDSMLEEVRAVLDQETVIFPWEAGDVLMLDNMLAAHARTPFEGPR 326

Query: 310 KVVVAMAQSHDNLQR 324
           KVVVAMA+ H NL +
Sbjct: 327 KVVVAMAEPHGNLHQ 341


>gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetase
            [Herbaspirillum seropedicae SmR1]
          Length = 9160

 Score =  241 bits (616), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 128/319 (40%), Positives = 182/319 (57%), Gaps = 5/319 (1%)

Query: 14   AGSELPALITPSAPGQSLLAVLPGLQGQIEKLLAQVGAVLLRGFDVPAVEDFRRFAAGFG 73
            AG E P +I P+A G  +       +G I  +L + G VL R F +    DF  FA    
Sbjct: 3775 AGREFPLVIEPAAAGLDMAEWARRERGYIADMLCKHGGVLFRNFGLRTPADFESFAEAI- 3833

Query: 74   HPLLDYEFGSTPRSAIGGGVYTTTEYPAHQSIPLHNEQAYTRIWPMKAWFHCVEPAQEGG 133
             P L   +G  P++  G   Y +T YP  + I  HNE A+   WP K WF C  P+  GG
Sbjct: 3834 EPELYGGYGDLPKNEGGKNTYRSTPYPEKEMILFHNESAHMERWPRKQWFFCELPSPVGG 3893

Query: 134  QTPIADSRAIYRRMPLAIRRRFADG-ILYVRNYGD-FDLPWQKVFNTEQRAEVEAFCRKA 191
             TPI D R +YRR+P  + +RF    +LY+R + +  D+ W+  F T+ R  VEA  + A
Sbjct: 3894 ATPIVDCREVYRRLPAELAQRFEQKQLLYIRTFTERLDVSWRDFFKTDDRRAVEARLQAA 3953

Query: 192  KIAWEWKSDGQLRTRQLCQAVETHPVTGEMVWFNQAHLFHVSNLQADVRESLEELLDIEE 251
               + W +  +L+TR LC AV THP TGE V+FNQ  L H++ L   VR  L  ++ +E 
Sbjct: 3954 GTQYRWLAGDELQTRTLCPAVITHPQTGEKVFFNQVQLHHIACLDPSVRRDLLAMVGMER 4013

Query: 252  LPRNTYFADGSSIPDVMLAEVREILDAETVSFLWKKGDVMMLDNMLVAHARAPFKGPRKV 311
            +PR+  + DGS I +  +A V ++ +   V F W++GDV+MLDNM+ AHAR P++GPRK+
Sbjct: 4014 MPRHVTYGDGSEIDEQTMALVGQLYEQCAVRFTWQQGDVVMLDNMIAAHARDPYEGPRKI 4073

Query: 312  VVAMAQSHDNLQRDLLAPA 330
            VVAM    +  ++DLL PA
Sbjct: 4074 VVAMGAMFE--RKDLLTPA 4090


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,758
Number of extensions: 47585
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)